| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3603 |
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| Symbol | |
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| ID | 7970678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3809593 |
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| End bp | 3810459 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794188 |
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| Product | transcriptional regulator, RpiR family |
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| Protein accession | YP_002945486 |
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| Protein GI | 239816576 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0193834 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGCCA GAGACCAGAT CCGCCAGCGT TTCAACGAAC TGAGCCCCGC CCTGCAGCAG
GTGGCGCGCT ACGTGCTCGA CCATCCCAAC GAGGTGGTGA CCGCGTCGAT GCGCAACGTG
GGCACGCGCG CGCAGAGCAC GCCCGCCACG CTGGTGCGCT TCGCGCAGCA CCTGGGCTAT
GCGGGCTGGC CGCAGCTCAA GGAAGCCTTT GCCGGCGACA TGGGCCTGGC CAGCGAAACC
TATGGCGGGC GCGCCAAGCA GCTGATCGGC CGCGCGCAGG ACCGCAGCCT CACGGCCGAG
ATGTTCGAGG TGCAGCGCCG CAACCTGGAG GCCACGCACC AGCAGAGCGA GCAGGCGCTG
CAAAAGGCCT GCGCGCTGAT CGAGAAGGCG CCGGCGGTAC ATGCGGCGGG TTTCAGGGCC
TGCTTTCCGA TCGCGTTCTC GTTCGTCTAT GTGTACCGGC TCTTCCGCGC CAGCGTGCAC
CTGGTCGATG GCCAGGGCGG CTCGCTCGAA ATGCAGCAGC GCGCCTTCGC CAAGGGCGAC
GCGCTGGTGG TGGCCAGCTT CAGGCCCTAC TCGCGCGAGG CGCTGCAGGT GGCCGAGGCG
GCCCGGGCGG CCGGCTGCCG CATCGTGGCC ATCACCGACA GCGTGGCCTC GCCGCTGTCG
CTCTTGGCGG ACGAAACGCT GCTCTTCACG ATCAACAGCC CCTCGTTCTT TCCTTCGGTG
GCGGCCGGCG TGGCCGTGAC CGAGGCACTG GTCGAGCTGC TCGCGAGCCG CGCGGGCAAG
CCGGTGATCC GGCGCATCGA CCAGGCCGAG GCGCAGCTGT TCGAGTCGGG TGCCTACCTG
GTGGCGCCGG TGGCGCGCGG AGGCTAG
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| Protein sequence | MGARDQIRQR FNELSPALQQ VARYVLDHPN EVVTASMRNV GTRAQSTPAT LVRFAQHLGY
AGWPQLKEAF AGDMGLASET YGGRAKQLIG RAQDRSLTAE MFEVQRRNLE ATHQQSEQAL
QKACALIEKA PAVHAAGFRA CFPIAFSFVY VYRLFRASVH LVDGQGGSLE MQQRAFAKGD
ALVVASFRPY SREALQVAEA ARAAGCRIVA ITDSVASPLS LLADETLLFT INSPSFFPSV
AAGVAVTEAL VELLASRAGK PVIRRIDQAE AQLFESGAYL VAPVARGG
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