Gene Vapar_3553 details

Gene Information

• Locus tag: Vapar_3553
• ID: 7972179
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3748311
• End bp: 3748967
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644794138
• Product: protein of unknown function DUF615
• Protein accession: YP_002945436
• Protein GI: 239816526
• COG category: [S] Function unknown
• COG ID: [COG3028] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGCA AACCCAAAAA AGGCTATTTC GTCCGTGGCC AGTTCGTTGC CGAAGGCAGC 
GAGCTCGACC TGGAGCTCAA GCGCGAGCTC AAGGGCACCG ACGAAGCCAG CCGCACCGAT 
CTCAAGCGCG AAAGCGATGA ACTGCAAAAG CTCGGCACCG AACTGCTCGG CCTGCGCGCC 
GGCCTGTTCG ATGCGCTGCC GCTGGGCGAA AAACTGGTCG ACGCCGTCGC CGAGGCCAAG 
CGCATCACCA ACTTCGAGGG CAAGCGGCGG CAGATGCAGT TCATCGGCAA GCTGATGCGC 
AAGCTCGAAC CCGAAGTACT CGAAGCCGTG AAGCTCGCCC TGACCGAGCA GAACAGCGTG 
CCCGCGGCCG AAACCGCCGC GCTGCACGAG GCCGAGCGCT GGCGCGACCG GCTGATTGCC 
GACGACGATG CGCTGGGCGG CTGGATCGAA ACCCACCCCG CCACCGATTC CCAGCAGCTG 
CGCGCCCTGG TGCGCCAGGC CCGCAAGGAC CTGAAGGCCG GGCCGGCCGG CGAGGCGCCG 
CGCCAGGGCA AGGCCTACCG CGAGATCTTC CAGCTGGTGC GCGCGCAGCT TGCGGTGCAC 
GGTGGTGCGG ACCATGCGGC GGCGGCAGCC GCGCAGGACC GGGAAGAGGA CGCATGA 

 

Protein sequence

MSRKPKKGYF VRGQFVAEGS ELDLELKREL KGTDEASRTD LKRESDELQK LGTELLGLRA 
GLFDALPLGE KLVDAVAEAK RITNFEGKRR QMQFIGKLMR KLEPEVLEAV KLALTEQNSV 
PAAETAALHE AERWRDRLIA DDDALGGWIE THPATDSQQL RALVRQARKD LKAGPAGEAP 
RQGKAYREIF QLVRAQLAVH GGADHAAAAA AQDREEDA