| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3536 |
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| Symbol | |
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| ID | 7972162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3732431 |
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| End bp | 3733321 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794121 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002945419 |
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| Protein GI | 239816509 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.279671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAC GCATCGGAGA ACAACGCGCC CCCGGCTTCT GGCCCTTGGC GATCGTGTTC
GCCCTCTTCG TGCTGTTCCT CTACGGCCCG ATGATCACGA TCTTCATCCT GAGCTTCCAG
GGCCCCGAAG GCGGGCTGAC CTTCCCCTTG CGCGGCGTCT CTCTGCACTG GTTCCACAAG
CTGGCCGAAG GCCTGGGCAC CGTCGACATC GGCGCGGCCT TCCGGCGCTC GCTGGCGCTG
GGCGCCGTGG TCATGGGCTT CACCGTGGTG CTGTCGGTGC TCGCCGGGCT CGCGTTCCGC
AAGAAGCTCA AGGGCAGCAA CGCCCTCTTC TTCGTGACCG TGGCGAGCCT CATCATGCCG
TCGATCATCA TCTCGCTCGG CATCGGCCTG CAGTTCCGGC TGCTCGACAC CGGCATCAAG
AGCCTGCTCA CGGCAATGGA CGCCACCACC CTGCTCGAAG GCTACGGCAC CGCGCTCGGC
CTCTTCAGCT CCGCGCTCGG CGCCCACCTG ACCTGGACCC TGCCCTTTGG CCTGCTCATC
ATGTTCGCGG TGTTCAACCG CTTCAACCCG GCCTACGAGG AAGCCGCGCG CGACCTCGGC
GCCACGCCGT GGCAGGCCTT CCGCTTCGTG GTGCTGCCGC TGATCGGGCC GTCGATCGTC
GGCATCGGCA TGTTCGGATT CACGCTGTCG TGGGACGAGA TCGCCCGCAC CTCGCAAGCC
ATCGGCGACG TCAACACGCT GCCGCTCGAG CTGCAGGGCC TGACCTCGAC CGTCACGACG
CCTTCCATCT ATGCGCTGGG CACGGTGACC ACCGTCGTTT CGCTGCTGGT CATGGCCGTG
GCGCTGGGCA CGGCCGCGCT GCTGCGCCGG CGCGCGGTCC GGCCGCGCTG A
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| Protein sequence | MSQRIGEQRA PGFWPLAIVF ALFVLFLYGP MITIFILSFQ GPEGGLTFPL RGVSLHWFHK
LAEGLGTVDI GAAFRRSLAL GAVVMGFTVV LSVLAGLAFR KKLKGSNALF FVTVASLIMP
SIIISLGIGL QFRLLDTGIK SLLTAMDATT LLEGYGTALG LFSSALGAHL TWTLPFGLLI
MFAVFNRFNP AYEEAARDLG ATPWQAFRFV VLPLIGPSIV GIGMFGFTLS WDEIARTSQA
IGDVNTLPLE LQGLTSTVTT PSIYALGTVT TVVSLLVMAV ALGTAALLRR RAVRPR
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