Gene Vapar_3392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3392 
Symbol 
ID7970630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3572331 
End bp3572639 
Gene Length309 bp 
Protein Length102 aa 
Translation table11 
GC content64% 
IMG OID644793976 
Productputative integral membrane protein 
Protein accessionYP_002945275 
Protein GI239816365 
COG category[S] Function unknown 
COG ID[COG5477] Predicted small integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.294707 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGATT GGATGGTCTG GACCACCCCG GTGGCCGTTT TCTTCATCTG CATCGCGCTC 
ATGCTGGTCG GCATGACGGT GTGGGAGTTC AAGTCGCCCA CCACCATGCG GCGCGGCTGG
CTGCCGATTG CCACCACGCG CGGCGACCGG CTCTTCATCG GGCTGCTGGC CGCGGCCTAT
GTGAACCTGG TCTTCATCGG CCTGGCCGGC AAGTTCCAGG AATGGATGAG CCTGGAAGCC
GAGCCCTCGA TCTGGATCAG CTTCGTGCTG TCGATGGGGC TGCTCGCGCT GGTGATGCGC
AAGGGCTGA
 
Protein sequence
MFDWMVWTTP VAVFFICIAL MLVGMTVWEF KSPTTMRRGW LPIATTRGDR LFIGLLAAAY 
VNLVFIGLAG KFQEWMSLEA EPSIWISFVL SMGLLALVMR KG