| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3369 |
|---|
| Symbol | |
|---|
| ID | 7970607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3546649 |
|---|
| End bp | 3548355 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644793953 |
|---|
| Product | ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD |
|---|
| Protein accession | YP_002945252 |
|---|
| Protein GI | 239816342 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC ATCCTCCGCC ACGGCCGCCG CTGCAGCTTT TTGCGCGGCC GGACGCCGCA
AGCCTCGTAC AAGGCGTGGC GGCGCTCACG TGGATTCCGC AGGCGGCGCT GCTGGCCATG
GCCGTGCAGG GGCTGGCCTC GGGGCAGGGG ATTGCGGCGG TGCAGTGGCC GGCTTGCGGC
ATCCTGCTGC TGGGCGTGCT GCGGGCCGTT TGCGAGGCAT GGGGCGCGCG ACGCATCTTC
GGACACGCGC GGGCGCAACT CTCGGCCCTG CGTGCCCAGA CTGCCCGGGC GCTGGCGGCC
GGTTCGCCGC TGGACCGCGA GCGTGCCGAG TCCGGGCGCG CGGCCAGCGT GCTGGCCGAG
CAGGCCGAAG CGCTGGTGCC GTATCTCGTG CGCTACCGGC CCGCGCGCTG GCGCGCCACG
GTGGTTCCCA TCGTCATCCT GGCGGCGGTG GCCAGCCTTT CGTGGGTGGC GGCGCTCGTG
CTGCTGGTTG CCGCTCCGCT GATTCCGCTT TTCATGGCCA TCGTCGGCTG GCGCGCCAAG
GCCGCGAGCG AGGCGCAGAT GGTCGAGATG GGCGGCATGA ACGCCTTCCT GCTCGACCGC
CTGCGCGGGC TGGCCACGCT GCGCGCGCTC GATGCGGTGG ATGCCGCCGC CGGGCGGCTC
GCGCAGGCGG CAGAGGCGCT GCGGGAACGG ACCATGGCGG TGCTGCGCAT CGCCTTTCTC
TCGTCGGCGG TGCTGGAGCT TTTCTCGGCG CTGGGTGTGG CCATGGTGGC GGCCTACGTC
GGCTTCCACC TGCTGGGCAC CCTGGGCTTT GGCGCCTGGG GAAGCCAGTT GAGCCTGGGG
GAAGGGCTGT TCATCCTGCT GCTTGCGCCG GCGTTCTTCG AACCGCTGCG CGAACTCTCG
GCGGTCTGGC ATGACCGCGC GGCCGGCGAG GCGGCACTGC AGGCACTCGA CGCGTTGCAA
AGGCGCGCAT TGCCCCTGCC TGGAGCGCAG GCCCCGGTTG CACGTGCCGC AACAGGCGCG
ACACGCGTGG GCTCCGCACC CGCCATCGTG ATCCGCGACC TGCATTTCGC GTGGCCGGCC
CAAGAGCGCA AGGTCTTCGA TGGTCTGGAC CTGCGCATCG GGGCCGGCGA GCACGTGGCG
CTCACTGGTG CGAGCGGCGC GGGCAAGACC GCGCTGCTGT CATTGCTGGC GGGGCTGCTG
CCGGCCGCGC ACGGCGACAT CTCCATCGGC GGCGTGACGC TGTCCGATCA CACCGCGGGT
GCGCTGCGCC AGCGCATCGC CTGGATGGGG CAGAGGCCGC ATGTGTTCGC GGGCTCGGTC
GAGTCCAACG TCGCGCTCGG GCGCGCGGGC GTGGGCGCCT CGCAGGTTGC GGCGGCAATG
CGCTTCGCCT CCCTCGAGAC GGTGGCGCAG GCGCATCCGG GCGTGGCGCT GGGCGAGGGC
GGCATCGGCC TGTCGGGCGG CGAGGCGGTG CGCCTGGCGC TGGCGCGCAT CGCGGTCCAC
CCCCATGCGG ACCTGCTGCT GGTGGACGAG CCCACCGCCC ACCTCGACAC CGAAACCGCC
ACCCAGGTGG CCGACGCGCT GCTGGCCCTG GCCCGCGGAA AGACCCTGGT CGTCGCCACG
CACGACCCGG TGCTGGCGGC GCGCATGAAC CGCTCGGTCC GTCTCGATGC CGAGCCGGCC
GATGCCGCCT TGGAGCGCGC CGCATGA
|
|---|
| Protein sequence | MIKHPPPRPP LQLFARPDAA SLVQGVAALT WIPQAALLAM AVQGLASGQG IAAVQWPACG
ILLLGVLRAV CEAWGARRIF GHARAQLSAL RAQTARALAA GSPLDRERAE SGRAASVLAE
QAEALVPYLV RYRPARWRAT VVPIVILAAV ASLSWVAALV LLVAAPLIPL FMAIVGWRAK
AASEAQMVEM GGMNAFLLDR LRGLATLRAL DAVDAAAGRL AQAAEALRER TMAVLRIAFL
SSAVLELFSA LGVAMVAAYV GFHLLGTLGF GAWGSQLSLG EGLFILLLAP AFFEPLRELS
AVWHDRAAGE AALQALDALQ RRALPLPGAQ APVARAATGA TRVGSAPAIV IRDLHFAWPA
QERKVFDGLD LRIGAGEHVA LTGASGAGKT ALLSLLAGLL PAAHGDISIG GVTLSDHTAG
ALRQRIAWMG QRPHVFAGSV ESNVALGRAG VGASQVAAAM RFASLETVAQ AHPGVALGEG
GIGLSGGEAV RLALARIAVH PHADLLLVDE PTAHLDTETA TQVADALLAL ARGKTLVVAT
HDPVLAARMN RSVRLDAEPA DAALERAA
|
|---|
| |