Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3353 |
Symbol | |
ID | 7970591 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3532732 |
End bp | 3533691 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793938 |
Product | inner-membrane translocator |
Protein accession | YP_002945237 |
Protein GI | 239816327 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAAT CTCCGAAGCA CCACATCCCG TGGGGCGCCC TGGGGCCGTG GCTGGCTCTG CTTGGCGCAT GCATCTTCTT TGCGACCCAG TCCGACCGTT TCCTCACGGG GGACAACCTC TCGCTGATCC TGCAGCAGGT GATGGTGGTC GGCGTGATCG CCATCGGCCA GACGCTGATC ATCCTCACGG CGGGCATCGA CCTGTCGTGC GGCATGGTGA TGGCGCTGGG CGGCATCATC ATGAGCAAGT TCGCGACCGA GCTCGGGCTG CCGGTGCCGG TGGCCATTCT TTGCGGCATC GGCGTGACCA CGCTGTTCGG CCTGGTCAAC GGCCTCTTGG TCACGCGCAT CAAGCTGCCG CCCTTCATCG TGACCTTGGG CACGCTGAAC ATCGCCTTCG CGATCACGCA GCTGTATTCG TCCTCGCAGA CCGTCACCGA CCTGCCCGCC GGCCTCACGG GCCTGGGCAC CACCTTTGCC GTCGGCGGCG CCGCGGTGGC CTGGGGCGCG GTGCTGATGC TGGTGCTCTA TGCGCTCGCG TGGTTCGTGT TGCGCGAGAC GGCCGCGGGG CGGCATATCT ACGCGGTGGG AAACAACGCA GAAGCCACGC GCCTGGTGGG CATTCCCACG CAGCGCGTGC TGCTGGGCGT TTACGTGGCG GCGGGCGCGC TCTACGGCAT TGCCTCGCTG CTGTCGGTGG CGCGCACCGG CGTGGGCGAC CCGAACGCGG GGCAGACCGA GAACCTCGAC GCCATCACGG CGGTGGTGCT CGGCGGCACC AGCCTGTTCG GCGGCCGCGG CGTGGTGCTG GGCTCGCTGA TCGGCGTGCT GATCGTGGGC GTGTTCCGCA ACGGGCTCAC GCTGATGGGC GTGTCCTCGA TCTACCAGGT GCTGGTGACG GGCGTGCTCG TGATTTTGGC GGTGGCGGCA GACCAGCTGT CGCGCCGGGG AGCCCGCTGA
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Protein sequence | MAKSPKHHIP WGALGPWLAL LGACIFFATQ SDRFLTGDNL SLILQQVMVV GVIAIGQTLI ILTAGIDLSC GMVMALGGII MSKFATELGL PVPVAILCGI GVTTLFGLVN GLLVTRIKLP PFIVTLGTLN IAFAITQLYS SSQTVTDLPA GLTGLGTTFA VGGAAVAWGA VLMLVLYALA WFVLRETAAG RHIYAVGNNA EATRLVGIPT QRVLLGVYVA AGALYGIASL LSVARTGVGD PNAGQTENLD AITAVVLGGT SLFGGRGVVL GSLIGVLIVG VFRNGLTLMG VSSIYQVLVT GVLVILAVAA DQLSRRGAR
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