| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3328 |
|---|
| Symbol | |
|---|
| ID | 7970566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3508143 |
|---|
| End bp | 3508694 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644793913 |
|---|
| Product | Tripartite ATP-independent periplasmic transporter DctQ component |
|---|
| Protein accession | YP_002945212 |
|---|
| Protein GI | 239816302 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGA TTTTCGACGG CTACTGCAAG CTGCTCGACA TGCTGATCGC GCTGGCGCTT
GCCATCATGG TGGTGCTGGT GTTCGGCAAC GTGGTGCTTC GCTATGCCTT CAACTCGGGC
ATCACCGTGT CGGAGGAAGT GTCGCGCTGG CTGTTCGTGT GGGTCACGTT CCTGGGGGCG
GCGGTCGCGG TCAAGGAGCG CGGGCACCTG GGCACCGACT TCCTGGTGGC CCGCCTGCCG
GTGCTGGGCA AGAAGATCTG CCTGGTGGTG GGCCATCTGC TCATGCTGTA TGCGACCTGG
CTGCTGTTCA GCGGCAGCCT GGCGCAGGCA AAAATCAATT GGGACGTGGA GGCGCCGGTG
ACCGGCGCAT CGGTGGCGAT CTTCTACGCC TCGGGCATCG TGTTCGCGGT GTCGGCGGCG
GTGTTCCTGC TGAGCGACCT GGTGCGCGCG CTCACCGGCC GGCTGGGCGA AGAGGAGCTC
GTGATGGTGC AGGAGTCGGA GGACCTTGCG CAGCTCGGGC GCGACGACGG CAACCCCCAT
GGCAAGCGCT GA
|
|---|
| Protein sequence | MTRIFDGYCK LLDMLIALAL AIMVVLVFGN VVLRYAFNSG ITVSEEVSRW LFVWVTFLGA
AVAVKERGHL GTDFLVARLP VLGKKICLVV GHLLMLYATW LLFSGSLAQA KINWDVEAPV
TGASVAIFYA SGIVFAVSAA VFLLSDLVRA LTGRLGEEEL VMVQESEDLA QLGRDDGNPH
GKR
|
|---|
| |