| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3309 |
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| Symbol | |
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| ID | 7973705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3486991 |
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| End bp | 3488022 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644793894 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002945193 |
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| Protein GI | 239816283 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.323003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAGC CCAAGCCCAT CCCCGCGAAA CTCAATCGCC GCCTACTGCT GGTCGCAGGC
GCAGCGCTGC CCCTGTTTTC GATCGTCACG CGCCGCGCGG ATGCTGCCGA GTTCGAACTC
AAGTACGCCA CCGGACAGGA TCCGACCCAC CCGGTCAACT TGCGCGCCAA GGAAGCGCAT
GACCGCATCC GGGAAGCCAC CTCGGGCCGG GTCAACATCA AGCTCTTTCC GGCCAATCAA
TTGGGCAGCG ACACGGACCT GCTGGCGCAA GTGCGAAACG GCTCGGTCGA GTTCTTCAAT
CTCTCCTCGC TGATCCTGTC GACCTTCGTG CCTGTCTCGG GCATCACGAG CGTGGGCTTT
GCCTTCAAGG GCTACGACGA TGTCTGGAAG GCGATGGACG GCGACCTGGG CAACCACATT
CGAGCCGAGA TCGCGAAGAC ACCCATCTTC ACCGTCTCGC GGATCTGGGA CAACGGCTTC
CGCCACGTCA CATCGTCCGG GCGCGAGATC AAGTCCGCAG CCGACCTGAA GGGCTTCAAG
GTGCGGGTGC CTCCCGCACC TCCGCTGACC TCGCTGTTCA AGGCGCTGGA CGCCGCTCCA
TCGCCGATCA ACTTCAACGA GGTCTACACC GCCTTGCAGA CCAAGGTGGT GGAAGGCCAG
GAGAATCCGC TCGCCATCAT CTCGACCGCG CGGCTCTACG AAGTCCAGAA GACCTGCAGC
CTGACCGGCC ATGTCTGGGA CGGCTACTGG GTTCTTGGCA ACAAGCGCGC ATTCCAGAAG
CTGCCATCGG ACGTCCAGCA GGTCATCACG CGAGAGATCG ACAAGTCCGC CATCGATCAG
CGGGCCGACG TTGCCAGGCT CAGCAGCAGC CTGGTGTCCG ACCTCAAGGC CAAGGGCGTC
GGCTTCATCG ACGTGCAGCA GGAAGACTTC CGCAACAAGC TGGCGAGCAC GGGCTTCTAC
GGCGAATGGA AGTCGAAGTA CGGCGCTGCG CCTTGGGATC TCCTGGAGAA AGTCTCCGGC
AAGCTCGGCT GA
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| Protein sequence | MTEPKPIPAK LNRRLLLVAG AALPLFSIVT RRADAAEFEL KYATGQDPTH PVNLRAKEAH
DRIREATSGR VNIKLFPANQ LGSDTDLLAQ VRNGSVEFFN LSSLILSTFV PVSGITSVGF
AFKGYDDVWK AMDGDLGNHI RAEIAKTPIF TVSRIWDNGF RHVTSSGREI KSAADLKGFK
VRVPPAPPLT SLFKALDAAP SPINFNEVYT ALQTKVVEGQ ENPLAIISTA RLYEVQKTCS
LTGHVWDGYW VLGNKRAFQK LPSDVQQVIT REIDKSAIDQ RADVARLSSS LVSDLKAKGV
GFIDVQQEDF RNKLASTGFY GEWKSKYGAA PWDLLEKVSG KLG
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