| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3279 |
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| Symbol | |
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| ID | 7973675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3453011 |
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| End bp | 3454273 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793864 |
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| Product | HipA domain protein |
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| Protein accession | YP_002945163 |
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| Protein GI | 239816253 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.153165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTTCTG ACGAGGCCGG GGACGAACGG CGCATCTACG TCGGGCTCGC GCGCCATACG
GGCGACGAGG TGCAGCCGGC CGGCCTGATG AAGCTCGTTC GCCGCGGCGT CGTGGAATCG
GGCGAATTCG CCTATGGCCG GCGCTACCTC CAGGACCCCG CGGCCCTGCC GCTCAACCCC
GAGCAACTGC CGCTGCGCGG TGCCGCTTTC ACATTGCCGG AGCGGCGCAT CCGCGAGGGT
GGCGCCATGC CGCTCACGCT GCGCGACGCC CTGCCCGACA GCTGGGGGCG CAAGGTGCTC
GAGATCCGCC ACGGCAAGCC CCTGACGGAC GTCGACGCGC TGCTGCTGAC CAACGAGGAC
CGCATCGGCG CGATGGTGTT CGCCGAGGCA TTGCCCATCC AGAGCGAAGA ACCGCCCTCC
ATGCTCTGGT CGCTGGAGGA GCTTGCCGAA GCCTCGCGCC GCGTCGAGGA AGGCATGGAG
ATCGGGCCCG ACATGCACCT GCTGCTGCGC GGCGGCAGCC TGGGCGGCGC GCGCCCCAAG
GCGGCCTTTG CGCATGAAGG ACGGCGCTAC ATCGCCAAGT TTTCCTCGCG CGGCGACGAC
CACGACGTGG AGGTGATCGA GGCCGCCACA CTCTGGCTGG CCAGCGCCTG CAGCATCCGT
GTGCCCGCCT TCCTGTTGCA GCCCCTGGCG TTCGGCCACG CCCTGCTGGT GGAGCGCTTC
GATCGCACCG GCCCCGTGAA CGACGAGCAG CGCCATCACT ACCTGTCGGC CTCGGCACTG
CTCGACGTGC CTTATGAATC CAGCCGCGGC AGCTATGTCG AACTCGCGCA GCTGCTGCGG
CGCATCTCGG CGCGGCCGCA AGAAGACCTG ACCGAGCTGT TTCGCCGCCT GGTGTTCAAC
CTGGCCGTGG GCAACAGCGA CGACCACGTC AAGAACCATG GCGCCCTGCG GCAGGGCGAC
GGCCTCTGGC GCCTGGCGCC TGCCTTCGAT CTTGTCATGC AGCTGGGCGG CCATACGGGC
TACCAGGAGC TTGCCATCCT GCCGGGGCAG CATGCATCGA GCCTTGCGCT GGCGCGTGCC
GCGGCGCCCC ACTTCGGCCT GTCGGCGGCA GAGGCGGACC GCATCATCCG CCGGACCGAA
GAGACCGTTT CGGTGCAGGC CGCGGCCAGC GTCGAAGCGT CCGGCGGCAA CCGCGAGCTC
GTGCGCCGCG TGGCGGCCTT CATCGAACAG CAGTACGACC GCATCCGTGC CCAGGGCCTG
TGA
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| Protein sequence | MTSDEAGDER RIYVGLARHT GDEVQPAGLM KLVRRGVVES GEFAYGRRYL QDPAALPLNP
EQLPLRGAAF TLPERRIREG GAMPLTLRDA LPDSWGRKVL EIRHGKPLTD VDALLLTNED
RIGAMVFAEA LPIQSEEPPS MLWSLEELAE ASRRVEEGME IGPDMHLLLR GGSLGGARPK
AAFAHEGRRY IAKFSSRGDD HDVEVIEAAT LWLASACSIR VPAFLLQPLA FGHALLVERF
DRTGPVNDEQ RHHYLSASAL LDVPYESSRG SYVELAQLLR RISARPQEDL TELFRRLVFN
LAVGNSDDHV KNHGALRQGD GLWRLAPAFD LVMQLGGHTG YQELAILPGQ HASSLALARA
AAPHFGLSAA EADRIIRRTE ETVSVQAAAS VEASGGNREL VRRVAAFIEQ QYDRIRAQGL
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