| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3154 |
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| Symbol | |
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| ID | 7974364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3315442 |
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| End bp | 3316191 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793738 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002945038 |
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| Protein GI | 239816128 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0903537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCAG CTGTTGCCCC TGCCCTTGTC TCCGCCTTCG CGCCCGGCGG CACGCTGCGC
GCATCGATCA ACCTCGGCAA CCCGATCCTC GCGAACAAGG ACGCGGCCAC CGGCGAACCG
GTGGGCGTAT CGATCGATCT CGCGCGCGAG TTCGCGCGGC GGCTTGGCGT GGGCATCGAG
CTGGTGGTGT TCGAGAAGGC GGCGGCCTCG GTCGACGCGG TGAAGAACGA GAAGGCCGAC
ATCGGCTTCT TCGCGATCGA CCCGGCGCGC AGCGAAGGGC TGCTGTTCAC CGCGCCTTAT
GTGCTGATCG AAGGCAGCTA TCTCGTGCGC GAGCCATCAG CGCTCACCAA CAACGCGCAG
GTCGATGCAA AGGGCCACCG CATCTCGGTC GGCGCGGGCA GCGCCTACGA CCTGTTCCTC
ACGCGCGAGA TCGAGCAGGC CGAGATCGTC CGGCTCCAGG GCGCGGCCGC CGCATTGGCG
GCGCTGCGTT CAGGCGCGGT CGAGGTGGCC GCCGGCATTC GCCAGCTGCT CGAAGCCGAG
GCGCGGCGCG AGCCGGGCGT GCGCCTGCTG CCCGGCCGCT TCATGGTGAT CCAGCAGGCC
ATGGGCACGC CCGCGAGCCG CGGTGCGCAG GCGCAGGCGC TGCTGTCTTC CTTTGTCGAG
GAGATGAAGG CGAGTGGCTT TGTTGCCGAT GCACTCCAAC GTCATCGCAT TGAAGGTGCG
ATCGTGGCGC CGGCTTCAAC TGGCCCTTAG
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| Protein sequence | MNPAVAPALV SAFAPGGTLR ASINLGNPIL ANKDAATGEP VGVSIDLARE FARRLGVGIE
LVVFEKAAAS VDAVKNEKAD IGFFAIDPAR SEGLLFTAPY VLIEGSYLVR EPSALTNNAQ
VDAKGHRISV GAGSAYDLFL TREIEQAEIV RLQGAAAALA ALRSGAVEVA AGIRQLLEAE
ARREPGVRLL PGRFMVIQQA MGTPASRGAQ AQALLSSFVE EMKASGFVAD ALQRHRIEGA
IVAPASTGP
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