| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3144 |
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| Symbol | |
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| ID | 7974354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3303697 |
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| End bp | 3304611 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793729 |
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| Product | urea ABC transporter, permease protein UrtB |
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| Protein accession | YP_002945029 |
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| Protein GI | 239816119 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.721908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCTGT CGGACATGAT GAACATCGGC CTGATGCAGG GCTTCGCGGG GCTGAGCCTG
TTCGCGGTGC TGCTGCTGAT GGGCCTCGGG CTCGCGATCA TCTTCGGCCA GATGGGCGTG
ATCAACATGG CGCATGGCGA GTTCATGACC ATCGGCGCCT ATTCGATCTA CCTGGCCGCG
CGCGTCACCG AAAGCCTGGC GCCCGCGTTC ATGCCGTACT ACTTTCCGAT CGCGATCGGC
CTCGCCTTCG TGTTCGCCTT CATCGTCGGA TGGATCGTGG AGTGGGTGCT GATCCGCCAT
CTCTACAAAC GCCCGCTCGA CACGCTGCTC GCCACCTGGG GCGTGAGCCT GGGGCTGCAG
CAGATCTTCC GCACCTTCAT CGGCCCGAAG GAAGTGAGCC CCACGCTGCC CGAATGGCTC
ATGGGCTCGT GGACGCCGCA TGAAGGCCTG GACATTCCGA TCAACGGCCT GTTCGTGCTC
GCACTCACCG CGCTGGTCAC CGGCGGCGTG CTGCTTGCGC TGCACAAGAG CCGCTGGGGG
CTGCGCGTGC GCGCCACCGT GGCCAACCGC ACCATGGCCA ATGCGACCGG CATCGACACC
ATGAAGACCG ACCGCCTGAC CTTTGCCATC GGCTGCGGCA TTGCCGGCAT GGCGGGCGCG
GCCTTCACCA CCATCGGCTC GACCGGGCCG ACCTCGGGCT CGCTCTACAT CGTGGATGCC
TTCCTGGTCG TCACCTTCGG CGGCGCGGCC AGCCTGCTGG GCACCGTGGT CTCGGCCTTC
GGCATTGCGC AGACGCAGTC GATCTCGGAG TTCTTCATGA CCGGCTCGAT GGCCAAGGTG
CTGACGCTCT CGCTGATCGT GCTGATTTTG ATGATGCGGC CGCAAGGGCT TTTCGCAGTC
AAGGTGCGTC GCTGA
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| Protein sequence | MTLSDMMNIG LMQGFAGLSL FAVLLLMGLG LAIIFGQMGV INMAHGEFMT IGAYSIYLAA
RVTESLAPAF MPYYFPIAIG LAFVFAFIVG WIVEWVLIRH LYKRPLDTLL ATWGVSLGLQ
QIFRTFIGPK EVSPTLPEWL MGSWTPHEGL DIPINGLFVL ALTALVTGGV LLALHKSRWG
LRVRATVANR TMANATGIDT MKTDRLTFAI GCGIAGMAGA AFTTIGSTGP TSGSLYIVDA
FLVVTFGGAA SLLGTVVSAF GIAQTQSISE FFMTGSMAKV LTLSLIVLIL MMRPQGLFAV
KVRR
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