| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3117 |
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| Symbol | |
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| ID | 7974327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3275422 |
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| End bp | 3276351 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793702 |
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| Product | protein TolA |
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| Protein accession | YP_002945002 |
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| Protein GI | 239816092 |
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| COG category | [A] RNA processing and modification |
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| COG ID | [COG5178] U5 snRNP spliceosome subunit |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain
[TIGR02794] TolA protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.321745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCTCG CACTGGATCG CCCCGAGTTC GCACCACCGC CGCAGCGCGG CACGCCGCGC
GCGGTGCTGC TCGCGCTGGT TGCGCACGCG CTGCTGATTG CCGCGCTGAC GTGGGGAGTG
CGCTGGCGCA GCGATGCCGA CGAAGGCGCC GTCGATGCGG AGCTGTGGTC TTCCACGGTG
CAGCAGGCTG CGCCGCGCCT GTCGGCGCCG CAGGCACCCA CGCCCGCTCC CGCGCCTCCG
CCGCCTGCGC CTCCTCCGCC GCCACCGCCG CCTCAGGTGA AGGCCCCCGA GCCCGCACCG
CCGCCGCGCG CGCCGGACAT CGCCCTCGAG CGCGAGAAAA AGCTCAAGGA AGAAAAGGAA
CAGAAGGAGC GCGAGCTCGA GCGCCAGCAA CAGCAGCGCA AGAAGGAGCT CGAAGCCAAG
CAGCGCGCCG AAGACGAAGC CGAACGCAAG AAGGCGCAGC AGCAAAAGCT CGCCGAACAG
CAGAAGAAAC AGCAGCAGGA GGCCGAGGCC AAGCAGGCCG AAGCGAAGAA GCAGCAGGAA
GCCGCAGCCA AGCAGGCCGC GGCCGACCGC GCCGCAACGC TCAAGCGCAT GCAGGGCCTC
GCGGGCGCGA GCGGCAGCGA CGATTCCAAG GGCACGGCAA TGCGCTCGTC AGGACCGTCG
AGCGGCTACG CCGGACGCAT TGCCGCGGCG GTGCGCCCCA ACATCACCTT CCCCGATGCC
GAGACGGTCA ACGGCAATCC GGCGGCCGAG TTCGAGGTGA ACCTGGCACC GGACGGCACC
ATCGTCGGCG TCAAGCTGAC CAAGTCGAGC GGACTGCCCA GCTGGGACGA AGCCGCCGAA
CGCGGCCTGC ACAAGACCGA CAAGCTGCCG CGCGACACCG ACGGGCGCAT CTTCCCGTCG
CTGATCGTCT CGCTGCGGCC CAAGCGGTAG
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| Protein sequence | MSLALDRPEF APPPQRGTPR AVLLALVAHA LLIAALTWGV RWRSDADEGA VDAELWSSTV
QQAAPRLSAP QAPTPAPAPP PPAPPPPPPP PQVKAPEPAP PPRAPDIALE REKKLKEEKE
QKERELERQQ QQRKKELEAK QRAEDEAERK KAQQQKLAEQ QKKQQQEAEA KQAEAKKQQE
AAAKQAAADR AATLKRMQGL AGASGSDDSK GTAMRSSGPS SGYAGRIAAA VRPNITFPDA
ETVNGNPAAE FEVNLAPDGT IVGVKLTKSS GLPSWDEAAE RGLHKTDKLP RDTDGRIFPS
LIVSLRPKR
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