| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3082 |
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| Symbol | |
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| ID | 7974291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3238106 |
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| End bp | 3239113 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793666 |
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| Product | N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase |
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| Protein accession | YP_002944967 |
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| Protein GI | 239816057 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG3252] Methenyltetrahydromethanopterin cyclohydrolase |
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| TIGRFAM ID | [TIGR03120] methenyltetrahydromethanopterin cyclohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACA CATCCCCGCC CGCAGCCGCA TCGGGCCTGA GCGTCAACCT GCTGGCCCGG
CCGCTGGTCG AGCGCCTGCT GGCCGATTCC GATGCGCTCG GGCTGCAGCT GCGCCGCGAC
GACAGCGGCG CACGCATCGT CGATGCCGGC ATCGAGGCAC GCGGCAGCGT GGCGGCCGGC
CTGCAGATCG GCGAGATCTG CATGGGCGGG CTGGGGCATG TGAACCTGCG CAGCGGCGCC
GCCGCCGAGG GCTGGCCCAC GTGGCTCGAC GTGCGCAGCT CGCAGCCGGT GCTGGCCTGC
CTTGGCAGCC AGTACGCCGG CTGGAGCCTC TCGGCCACCA AGGAAGAGAC CGGCGGCAAG
AAGTTCTTTT CGCTCGGCTC GGGGCCGGCG CGCGCGCTGG CGGTCAAGGA AAAACTCTTT
GCCGAACTGG GCTACCGCGA CCATGCACCC TGCGGCGTGC TGGTGCTGGA AGTCGATCGC
GCGCCGCCGA AGATCGTGAT CGACAAGCTG CTGCGCGATT GCGGCCTGGC TGCCGAAGCG
CTGACCCTGA TCCTCACGCC CACCACCAGC CTGGCAGGCA CCACGCAGGT GGTGGCGCGC
GTGCTCGAGG TGGCATTGCA CAAGGCGCAC GAGCTGGGCT TTGCGCTGGG CAACATCGTC
GAGGGCGCCG GCACCGCGCC GCTGCCGTCG CCGAGCGCCG ATGGCGTCGA GGCCATGGGC
CGCACCAACG ATGCCATCCT GTACGGCGGC CGCGTGCACC TGACGGTCCG CGGCGACGAC
GCCGCGGCAC GGGAGCTGGC GCGCGCGCTG CCCTCGCGCA ATTCGCGCGA CCACGGACGC
TCGTTCGCCG AGATCTTCAA GGAGGTCGAA TACGACTTCT ACAAGATCGA CGGCGCCTTG
TTCGCACCGG CCGAGGTGTG GGTCAGCAAC ATCGACAGCG GCAACACCTG GCACGGCGGC
GCGACCGACA TGGCGCTGCT GCAGCGCCTG TGGCTGCAGG AGGCCTGA
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| Protein sequence | MSNTSPPAAA SGLSVNLLAR PLVERLLADS DALGLQLRRD DSGARIVDAG IEARGSVAAG
LQIGEICMGG LGHVNLRSGA AAEGWPTWLD VRSSQPVLAC LGSQYAGWSL SATKEETGGK
KFFSLGSGPA RALAVKEKLF AELGYRDHAP CGVLVLEVDR APPKIVIDKL LRDCGLAAEA
LTLILTPTTS LAGTTQVVAR VLEVALHKAH ELGFALGNIV EGAGTAPLPS PSADGVEAMG
RTNDAILYGG RVHLTVRGDD AAARELARAL PSRNSRDHGR SFAEIFKEVE YDFYKIDGAL
FAPAEVWVSN IDSGNTWHGG ATDMALLQRL WLQEA
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