| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3053 |
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| Symbol | |
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| ID | 7973773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3211271 |
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| End bp | 3212428 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793637 |
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| Product | pyrroloquinoline quinone biosynthesis protein PqqE |
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| Protein accession | YP_002944938 |
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| Protein GI | 239816028 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR02109] coenzyme PQQ biosynthesis protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCG CCGCGCCGCC GCGCCCCGGA CCGCCGCTGT GGCTGCTGGC CGAGCTGACC
TACCGCTGCC CGCTGCATTG CGTGTTCTGC TTCAACCCGG TCGACTTCGC GCAGCAGGAG
AACGAACTGG GCACCGAGGA CTGGCTGCGC GTGCTGCGCG AAGGCCGCGA GCTCGGCGCG
GTGCAGTGCG GCCTCTCGGG CGGCGAGCCG CTGCTGCGCG ACGACCTCGA GATCATCATT
GCCGAGGCCG CGCGCCTGGG CTACTACACC AACCTGCTGA CCTCGGGCGT GGGCCTCACG
GCGCAGCGCG CCGCCGCGCT CAAGGCCGCG GGCCTGGACC ACGTGCAGCT GTCGTTCCAG
GACTCGACGC GCGAGATGAA CGACTTCCTC TCGCACACCA AGACCTTCGA GCTCAAGAAC
CGGGTGGCGA AGATCATCAA GGACCAGGGC TGGCCGATGG TGCTGAACGT GGTGATCCAC
CGCATGAACA TCGACCACAT CGACCGCATC ATCGAGATGG CGCACGAGAT GGGGGCCGAG
TACCTCGAGC TTGCCAACAC CCAGTACTAT TCCTGGGCCT TCGTCAACCG CGACCAGCTG
CTGCCCACGC ACGAGCAACT GCGCCATGCG GAGGAGGTGA CCGATGCCTG GCGCAAGCGG
CTCGGCGAGC GCATGCGCAT CTTCTTTGTG GCGCCCGACT ACCACGAGGG CAAGGCCAAG
AAATGCGTGA ACGGCTGGGG CAGCATGTTC CTCACCGTGG CGCCCGACGG CACCGCGCTG
CCTTGCCACA CGGCCAAGAT GCTGCCGGGC CTCGAATTCC CGAACGTGAA GGCGCACAGC
CTGCGGGAGA TCTGGTTCGA TTCGGAAGGC TTCAACCGCT ACCGCGGCAC CGGCTGGATG
AAGGAGCCCT GCGCGAGCTG CGACCAGCGC GAGCAGGACC TGGGCGGCTG CCGCTGCCAG
TCCTACCTGC TGGCGCAGGA CGCGGCCGCG GCCGATCCGG TGTGCGCGAA GAGCCCGGAC
CACCACCGCG TGGTCGAGGC GGTGGAGCGT GCGGCCGCGC GCGACCCGGC GGCGCCGACG
GAGCATCCGC TGGTGTTCCG CGATCCCGCC AATTCGCGGC GGCTTTCCTC CGTGGCGCTC
GTCACGCCGG ACGCGTGA
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| Protein sequence | MTTAAPPRPG PPLWLLAELT YRCPLHCVFC FNPVDFAQQE NELGTEDWLR VLREGRELGA
VQCGLSGGEP LLRDDLEIII AEAARLGYYT NLLTSGVGLT AQRAAALKAA GLDHVQLSFQ
DSTREMNDFL SHTKTFELKN RVAKIIKDQG WPMVLNVVIH RMNIDHIDRI IEMAHEMGAE
YLELANTQYY SWAFVNRDQL LPTHEQLRHA EEVTDAWRKR LGERMRIFFV APDYHEGKAK
KCVNGWGSMF LTVAPDGTAL PCHTAKMLPG LEFPNVKAHS LREIWFDSEG FNRYRGTGWM
KEPCASCDQR EQDLGGCRCQ SYLLAQDAAA ADPVCAKSPD HHRVVEAVER AAARDPAAPT
EHPLVFRDPA NSRRLSSVAL VTPDA
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