| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2946 |
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| Symbol | |
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| ID | 7972222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3104733 |
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| End bp | 3105767 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793531 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002944832 |
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| Protein GI | 239815922 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.116907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACC GATTCCGTCC CGCACTGGCC ATGGCCGCAG CCGTTGCAGC GCTTGCCGCT
GCCGCCCCCG CCTTTGCCGG CAAGACCCTC GATGCCGTCA AGCAGCGCGG CACCGTCAAG
TGCGGCGTGA CCAATGGCGT GGCCGGCTTT TCCGCGCCCG ATACGCAGGG CAACTGGTCG
GGCCTGGACG TCGACACCTG CCGCGCCATT GCGGCGGCCG TGCTCGGCGA TCCGAAGAAG
GTCGACTTCG TGCCGCTCAA TTCGCAGCAG CGCTTCTCGG CGCTGCAGGC CGGCGAGATC
GACATCCTTG CGCGCAACAC CACCTGGACG CTCACGCGCG ATGCGTCGCT GGGCTTCAAC
TTCACCACCA TCACCTACTA CGACGGCCAG GGTTTCCTGG TGCCGAAGAA GCTCAAGGTG
ACGAGCGCCA AGCAGCTCAA GAACGCGACC ATCTGCACGC AGTCGGGCAC CACCAACGAG
AAGAACGTGT CCGACTACTT CCGCGCGCAG AACATCCCGG TCAAGACGGT GGTGTTCGAG
AGCTTCGAGG CCTCGTTCAA GGCCTTCTTC TCGGGCCGCT GCCAAGCCTT CACCACCGAC
GCCTCGGCGC TGGCGGGCTT GCGCAACAAG GAAGCGCCGA ACCCCGACGA CTACGTCATC
CTGCCCGAGC TCATTTCCAA GGAGCCGCTC GCGCCGCTGG TGCGCCGCGG CGACGACGAA
TGGTTCGCCA TTGCCAAATG GGTGCCCAAC GCGCTCATCG AGGCCGAGGA ATTCGGCGTC
ACGCAGGCCA ATGCCGACGA GCTCAAGGCC GGCAGCAAGG ACCCGGCGCA GCAGCGCCTG
CTGGGCGCCG GCGAAGACCT GGGCAAGCTG CTGGGCCTGG ACAAGGACTG GTCGTTCCGC
GCCATCAAGG CCGTCGGCAA CTACGGCGAG ATGTTCGAGC GCAACGTGGG CCCCAAGTCG
GTCCTGAAGC TGCCGCGCGG CTCGAACAAC CTCTGGAACA AGGGCGGCCT GATCTACGCA
CCACCGGTTC GATGA
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| Protein sequence | MKNRFRPALA MAAAVAALAA AAPAFAGKTL DAVKQRGTVK CGVTNGVAGF SAPDTQGNWS
GLDVDTCRAI AAAVLGDPKK VDFVPLNSQQ RFSALQAGEI DILARNTTWT LTRDASLGFN
FTTITYYDGQ GFLVPKKLKV TSAKQLKNAT ICTQSGTTNE KNVSDYFRAQ NIPVKTVVFE
SFEASFKAFF SGRCQAFTTD ASALAGLRNK EAPNPDDYVI LPELISKEPL APLVRRGDDE
WFAIAKWVPN ALIEAEEFGV TQANADELKA GSKDPAQQRL LGAGEDLGKL LGLDKDWSFR
AIKAVGNYGE MFERNVGPKS VLKLPRGSNN LWNKGGLIYA PPVR
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