| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2875 |
|---|
| Symbol | |
|---|
| ID | 7970764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3021316 |
|---|
| End bp | 3023691 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644793460 |
|---|
| Product | RNA binding S1 domain protein |
|---|
| Protein accession | YP_002944761 |
|---|
| Protein GI | 239815851 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA TCATTCGCCA GCTCGCCGCC GAGATCAAGG TAGGCGAGCA CCAGGTGAAG
GCGGCCATCG AACTGCTCGA TGGCGGTGCC ACGGTTCCGT TCATTGCCCG CTACCGCAAG
GAAGTGACCG ACGGCCTCGA CGACATCCAG CTGCGCGAAC TCGAGGCGCG CCTTTCGTAC
CTGCGCGAAC TCGAAGACCG CCGCGCCGCG GTGTTGAAGA GCATCGACGA GCAGGGCAAG
CTCACGCCCG AGCTGCGCGC CGCCATCGAA TTCGCGCCGA CTAAGCAGGA GCTCGAGGAC
CTGTACCTGC CGTTCAAGCA GAAGCGCCGC ACCAAGGGCC AGATCGCGCG CGAGTTCGGC
ATCGAGCCGC TCGCCGACAA GCTGTTGGCC GACCCCACGC TCGACCCCGC CGTGGAAGCC
AAGGCCTTCC TGCAGCCCGC CACCACGCTC GACGATGGCA AGCCGGGCCC CGATTTCTCG
ACCGTTCCAG CCGTGCTCGA CGGCGTGCGC GACATCCTTT CCGAACGCTG GGCCGAGGAT
GCAGCGCTGG TGCAGAGCCT GCGCGAATGG CTCTGGAACG AAGGCCTGCT CAAGTCCACG
CTGATGGCTG GCAAGGACGA GAACAACGCC GACATCGCCA AGTTCCGCGA CTACTTCGAC
TACGACGAGC CCATCGGCCG CGTGCCTTCG CACCGCGCGC TGGCGGTGTT CCGCGGCCGC
GCGCTCGACA TCCTCGACGC CAAGCTGGTG CTGCCGGTGG AGCCCGAGCC GGGCAAGCCC
AGCGTCGCCG AAGGCCGCAT CGCGCTGCAC CTGGGCTGGA GCCACGCCGG CCGCGCGGCC
GACGACCTGC TGCGCAAGTG CGTGGCCTGG ACCTGGCGCG TGAAGCTCGC GCTTTCCACC
GAGCGCGACC TGTTCACCCG CCTGCGCGAA GAGGCCGAGA AGGTGGCGAT CAAGGTGTTT
GCCGACAACC TGCGCGACCT GCTGCTGGCC GCACCGGCCG GCCCGCGCGT CGTGATGGGG
CTGGACCCCG GCATCCGCAC CGGCGTGAAG GTGGCCGTGG TCGATGCCAC CGGCAAGCTG
GTCGAGACCG CCACCGTGTT CCCGCACGAG CCGCGCAAGG ATTGGGAAGG CTCGCTGCAC
ACGCTCGGCA AGCTGTGCGC CAAGCATGGC GTGAACCTGA TCGCGATCGG CAACGGCACC
GCCAGCCGCG AGACCGACAA GCTGGCCGCC GACCTCATCA AGCTGCTGGC CAAGATGGCC
GCGCAGGCCG GCGCGCCCGA GATGAAGGTC GACAAGGTGG TGGTGAGCGA GGCCGGTGCT
TCCGTCTATT CGGCCAGCGA ATTCGCCTCG CAGGAAATGC CCGACGTGGA CGTGAGCCTG
CGCGGCGCAG CGAGCATTGC GCGCCGCCTG CAGGACCCGC TGGCCGAGCT CGTGAAGATC
GACCCCAAGA GCATCGGCGT GGGCCAGTAC CAGCACGACG TGAACCAGAG CGAACTCGCG
CGCACGCTGC AGGCCGTGGT GGAAGACTGC GTGAATTCGG TGGGCGTGGA CCTCAACACC
GCGAGCGTGC CGCTGCTGAG CCGCGTCTCG GGCCTGTCGG CCAGCGTGGC CAAGGCGGTG
GTGCGCTGGC GCGAAGCCAA CGGCGCGTTC TCCACGCGCA AGCAGCTGCT CGACGTGAGC
GGCTTCGGCC CCAAGGCCTT CGAGCAGAGC GCGGGCTTCC TGCGCATCCG CGGCGGCGCC
GACCCGCTCG ACGTGACCGG CGTGCACCCC GAAACCTATC CGCTGGTCGA GCAGATCATC
GTCAAGACCG GCAAGCCGAT CGCCGAGCTG ATGGGCCGCG CCGAGATGCT CAAGACCCTG
AAGCCCGAGC TGTTCGTGAA CGAAAAGTTC GGCGTCATCA CGGTCAAGGA CATCCTGGGC
GAACTCGAGA AGCCCGGCCG CGACCCGCGC CCGGACTTCA AGGTGGCGCG CTTCAACGAC
GGCGTGGACG ACATCAAGGA CCTGGTCGAG GGCATGATCC TCGAAGGCAC CGTGAGCAAC
GTGGCGCAGT TCGGCGCCTT CATCGACCTG GGCGTGCACC AGGACGGCCT GGTGCACGTG
AGCCAGCTGA GCCACAAGTT CGTGAACGAT GCGCGCGAGG TCGTGAAGAC CGGCGACATC
GTCAAGGTGA AGGTGATGGA AGTGGACGTG GCGCGCAAGC GCATCGGCCT GTCGATGAAG
CTCGACGCAG CGCCCGCCCG CCGCGACGGC CCGCGCGACA ACCGCTTCGA AGGCGCAGGC
CGCGGCCAGC AGCAGGGCCC GCGCCGCGAC AACTCGCCGC AGCCGGCGGG GCAGATGGCG
AGTGCGTTTG CGAAGCTGCA GGGGTTGCGC AAGTAG
|
|---|
| Protein sequence | MQKIIRQLAA EIKVGEHQVK AAIELLDGGA TVPFIARYRK EVTDGLDDIQ LRELEARLSY
LRELEDRRAA VLKSIDEQGK LTPELRAAIE FAPTKQELED LYLPFKQKRR TKGQIAREFG
IEPLADKLLA DPTLDPAVEA KAFLQPATTL DDGKPGPDFS TVPAVLDGVR DILSERWAED
AALVQSLREW LWNEGLLKST LMAGKDENNA DIAKFRDYFD YDEPIGRVPS HRALAVFRGR
ALDILDAKLV LPVEPEPGKP SVAEGRIALH LGWSHAGRAA DDLLRKCVAW TWRVKLALST
ERDLFTRLRE EAEKVAIKVF ADNLRDLLLA APAGPRVVMG LDPGIRTGVK VAVVDATGKL
VETATVFPHE PRKDWEGSLH TLGKLCAKHG VNLIAIGNGT ASRETDKLAA DLIKLLAKMA
AQAGAPEMKV DKVVVSEAGA SVYSASEFAS QEMPDVDVSL RGAASIARRL QDPLAELVKI
DPKSIGVGQY QHDVNQSELA RTLQAVVEDC VNSVGVDLNT ASVPLLSRVS GLSASVAKAV
VRWREANGAF STRKQLLDVS GFGPKAFEQS AGFLRIRGGA DPLDVTGVHP ETYPLVEQII
VKTGKPIAEL MGRAEMLKTL KPELFVNEKF GVITVKDILG ELEKPGRDPR PDFKVARFND
GVDDIKDLVE GMILEGTVSN VAQFGAFIDL GVHQDGLVHV SQLSHKFVND AREVVKTGDI
VKVKVMEVDV ARKRIGLSMK LDAAPARRDG PRDNRFEGAG RGQQQGPRRD NSPQPAGQMA
SAFAKLQGLR K
|
|---|
| |