| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2845 |
|---|
| Symbol | |
|---|
| ID | 7970734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2991658 |
|---|
| End bp | 2993391 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644793430 |
|---|
| Product | serine/threonine protein kinase |
|---|
| Protein accession | YP_002944731 |
|---|
| Protein GI | 239815821 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.36762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCCG GCCTCGCGGT CTCCATCGGC CAGTACTCCG ACAAGGGACG CAAGGAGGCC
AACCAGGACT TCCACGGCGC CGCCCTGCCG CAGGCGCCGG GCCGCAGCGC CAAGGGCGTG
GCCGTTGCGA TTGCCGACGG CATCAGCAGC AGCGACGTGA GCCACGTGGC CAGCGAGTCG
GCGGTCAGGA GCTTCCTGAC CGACTACTAC TGCACCTCCG ATGCATGGAG CGTGAGCCGC
TCGGCACAGC GCGTGCTCAC GGCCGCCAAT GCCTGGCTGC ACGCGCAGAC CCAGAACAGC
AGCGGACGCT TCGACAAGGA CCGCGGCTAC GTCTGCACCT TCAGCGCGCT GGTGATCAAG
TCGACCACGG CGCACGTCTT CCATGTGGGC GACACGCGCG TCTACCGCTG GCATGCCGGG
GCGCTCGAGC AGCTGACCGA AGACCACCGC GTCTCGGTGG CCGGCGGGCA CAGCTACTTG
AGCCGCGCGC TGGGCGTGGG GCCGCATGTG GAGATCGACT ACCAGGCCAT CGCCATCGAG
AAAGGCGATG TCTTCCTGCT GACCTCCGAC GGTGTCCATG AACACGTGGA TGCGGCCGCC
GTCAACGCCG CGCTCGATGC CCACCCCGGC GACCTGGACG CTGCGGCAAG AAGCATCGCC
GAGGAAGCGT ACCGGCGCGG CAGCCCCGAC AACCTGACGG TGCAGATCGT GCGCGTCGAC
GCCCTGCCCG ACGGCGAGGT CAACGAACTG CAGGCGCAGC GCGCGGCACT GCGCCTGCCG
CCAGTGCTCG AAGCGCGCAT GCAGTTCGAC GGCTACACCA TCGTGCGCGA CCTGCACCGC
AGCAGCCGCA GCCACATCTA CCTGGCGGTC GACGACGACA CGGGCGAGCG CGTCGTGCTC
AAGACGCCGT CCGTCGACCT GCAGAACGAC GAGGCCCATC TCGACCGCTT CCTGCTCGAG
GAATGGGTGG CGCGGCGCAT CGACAGCGCG CATGTGCTCA AGCCGCATGT GCCGCAACGC
AAGCGCAGCT ATCTTTATGT GGCCATGGAG TTCGTCGACG GGCAGACGCT CGCGCAGTGG
ATGGTCGACA ACCCGCGGCC GAGCCTGGAG TCGGTGCGCG GCATCGTGGA GCAGTTGGCC
AAGGGGCTGC AGGCCTTCCA TCGCATGGAG ATGCTGCACC AGGACCTGCG GCCCGAGAAC
ATCATGATCG ACCGCACGGG CACGGTGCGG ATCATCGACT TCGGCTCGGC TTGGGTGGCG
GGCCTGGGCG ACAGCAAGCT GGCCGACCCG GCCCAGGTGC TGGGCACGGT GCAGTACACG
GCGCCCGAGT ACTTCGTCGG CGACGGCGGC TCGGCGCAGT CCGACCTGTT CTCGCTGGCC
GTGATCGTCT ACCAGATGCT GACTGGCCGC CTGCCCTACG GCGCGCAGGT GGCGCGCATC
CGCACGCGCG CGGACCAGCG CAACCTGCAG TACCGCCCGG CACTCGACGC GCAGCGCGCC
ATCCCCGCAT GGATCGACGA AGTGCTGCGC AAGGCGCTGC ATCCCAACCC GCTCAAGCGC
CATGAAGCGC TGTCGGAATT CGTCGAGGAC CTGCGCCAGC CGCATCCCGA TTTCCTGAAC
CGGCGCGGCA CGCCGCTCGT CGACAAGAAC CCGGTGGTCT TCTGGAAATG CACCGCCTTG
CTGCTGGGCA TGGCGGTGGT GGTGCTGCTT GGGGTGATCA GCCTGCGCAG CTGA
|
|---|
| Protein sequence | MRSGLAVSIG QYSDKGRKEA NQDFHGAALP QAPGRSAKGV AVAIADGISS SDVSHVASES
AVRSFLTDYY CTSDAWSVSR SAQRVLTAAN AWLHAQTQNS SGRFDKDRGY VCTFSALVIK
STTAHVFHVG DTRVYRWHAG ALEQLTEDHR VSVAGGHSYL SRALGVGPHV EIDYQAIAIE
KGDVFLLTSD GVHEHVDAAA VNAALDAHPG DLDAAARSIA EEAYRRGSPD NLTVQIVRVD
ALPDGEVNEL QAQRAALRLP PVLEARMQFD GYTIVRDLHR SSRSHIYLAV DDDTGERVVL
KTPSVDLQND EAHLDRFLLE EWVARRIDSA HVLKPHVPQR KRSYLYVAME FVDGQTLAQW
MVDNPRPSLE SVRGIVEQLA KGLQAFHRME MLHQDLRPEN IMIDRTGTVR IIDFGSAWVA
GLGDSKLADP AQVLGTVQYT APEYFVGDGG SAQSDLFSLA VIVYQMLTGR LPYGAQVARI
RTRADQRNLQ YRPALDAQRA IPAWIDEVLR KALHPNPLKR HEALSEFVED LRQPHPDFLN
RRGTPLVDKN PVVFWKCTAL LLGMAVVVLL GVISLRS
|
|---|
| |