| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2834 |
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| Symbol | |
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| ID | 7970723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2978914 |
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| End bp | 2979429 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793419 |
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| Product | protein involved in methylation |
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| Protein accession | YP_002944720 |
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| Protein GI | 239815810 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.307556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATGG CCGGCACGCG CGCTCGCGGT TTCACGCTCA TCGAACTGAT GGTCACCCTC
GTGGTGCTGA TCGTGCTGGT GTCGGTGGCG GTTCCCTCCT TCGACTACAT AAGGCTTTCG
ACCCGGCTGA ATTCCTACGC GACCGATCTC GTTGCCGGCA GCCAGCTCGC GCGCAGCGAG
GCCATCAAGC GCAACGCGCC CGTCACGCTG TGCGCCTCGT CCAACGGCAC CAGTTGCGCC
ACCGACGGTC AATGGGAGGC CGGCTGGATC ATCATCAGCA GCGGTGCGAC ACCCACGGTC
ATCCAGAAGC AGCCCGCGGC CGCCAGCGGC TACCGCATCC GCGACAGCGG CGGCCTCAGC
GCGCTCGCCT TCGAAGGGAC CGGCGTCGGC GCCACCGCGG CCAACTTCAC GATCTGCCGG
GCTACCCCGC TGGGTACCCC GAAGCGGCTG GTCAAGATCA GCGCCACTGG CCGTTCCTCT
GTCACGCGGA CCGATGCAGG AAGCTGCGCC GCATGA
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| Protein sequence | MAMAGTRARG FTLIELMVTL VVLIVLVSVA VPSFDYIRLS TRLNSYATDL VAGSQLARSE
AIKRNAPVTL CASSNGTSCA TDGQWEAGWI IISSGATPTV IQKQPAAASG YRIRDSGGLS
ALAFEGTGVG ATAANFTICR ATPLGTPKRL VKISATGRSS VTRTDAGSCA A
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