| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2742 |
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| Symbol | |
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| ID | 7972343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2890095 |
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| End bp | 2891129 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793329 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002944630 |
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| Protein GI | 239815720 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4174] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.564581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGCT ACATCCTCAA GCGCCTGCTG CTGATGATCC CCACGCTGCT GGGCGTGCTC
GTCATCACCT TCGGCGTGAT CCAGTTCGTG CCGGGCGGCC CGGTCGAGCA GATGGTGGCG
CAGCTGCAGG GGCGCGATTC AGGCGGCGAG CGGGCCGCGG CCAGCGGCGC CGGCTACCGC
GGCCGCCAGG GCCTCGACCC GCAGCGCGTC GAGGACATCC GCAAGCTCTA CGGCTTCGAC
AAGCCCGCCC ACGAGCGCCT GTGGACCATG CTGAAGTCGT TCGCACGCTT CGACCTGGGC
ACCAGCTTCT ACCAGCGCAA GGACGTCTGG CAGCTCATCA AGGAGAAGAT GCCGGTGTCG
ATCAGCCTCG GCCTCTGGAC CTTCTTCATC AGCTACCTGA TCGCGGTGCC GCTGGGCGTG
GCCAAGGCCG TGAGGGCCGG CACGCGCTTC GACTTCGTCA CCACGCTGAT CGTGCTGGTC
GGCTATGCCA TTCCGGGCTT CGTGCTGGGG GTGGCGCTGC TCGTGATCTT CGGCGGGCAG
CTGCAGTGGT TTCCGCTGCG CGGCCTCACG TCGCCCAACT GGGAGAGCAT GAACTGGGGC
GCACGCGTCG TCGACTACCT GTGGCACATC GCGCTGCCGG TGACCTCGAT GGTGCTCGGC
AGCTTTGCCG TCACCGCCAT GCTCACGAAG AATTCTTTCC TCGAGGAAAT CCGCAAGCAG
TACGTGCTGA CCGCGCGCGC CAAGGGGCTG TCGCAGCGGC AGGTGCTCTG GAAGCATGTG
TTCCGCAATG CGCTGATCCC GATCATCACC GGCTTTCCGT CGGCCTTCAT CGGTGCGTTC
TTCACCGGCT CGCTGCTGAT CGAGACGCTG TTCACACTCG ACGGCCTGGG CCTGCTGAGC
TACGAGAGCG TGATCCGCCG CGACTATCCC GTGGTGCTGG GCACGCTCTA CCTGTTCACG
CTGATCGGCC TGGTCACCAA GCTGATTTCC GACCTCTGCT ACGTCTGGGT CGATCCGAGG
GTCAAGTTTG ACTAG
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| Protein sequence | MTSYILKRLL LMIPTLLGVL VITFGVIQFV PGGPVEQMVA QLQGRDSGGE RAAASGAGYR
GRQGLDPQRV EDIRKLYGFD KPAHERLWTM LKSFARFDLG TSFYQRKDVW QLIKEKMPVS
ISLGLWTFFI SYLIAVPLGV AKAVRAGTRF DFVTTLIVLV GYAIPGFVLG VALLVIFGGQ
LQWFPLRGLT SPNWESMNWG ARVVDYLWHI ALPVTSMVLG SFAVTAMLTK NSFLEEIRKQ
YVLTARAKGL SQRQVLWKHV FRNALIPIIT GFPSAFIGAF FTGSLLIETL FTLDGLGLLS
YESVIRRDYP VVLGTLYLFT LIGLVTKLIS DLCYVWVDPR VKFD
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