| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2617 |
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| Symbol | |
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| ID | 7972379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2760819 |
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| End bp | 2764067 |
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| Gene Length | 3249 bp |
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| Protein Length | 1082 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793205 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_002944508 |
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| Protein GI | 239815598 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.294532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAGC GCTCAGACCT CCAATCCATT CTCATCATCG GCGCCGGCCC GATCATCATC
GGCCAGGCCT GCGAGTTCGA CTACTCCGGC GTGCAGGCTT GCAAGGCACT GCGCGAGGAG
GGCTACAAGG TCATCCTGAT CAACAGCAAC CCCGCCACGA TCATGACCGA CCCGGCCACG
GCCGACGTGA CCTACATCGA GCCGATCACC TGGCAGACGG TCGAGAAGAT CATCGCCAAG
GAGCGCCCCG ACGCGATCCT GCCGACCATG GGCGGCCAGA CGGCGCTGAA CTGCGCGCTC
GACCTCTGGC GTCACGGCGT GCTCGACAAG TACACCGGCG CGGCCACCAA CAAGCCGGTC
GAACTGATCG GCGCCACGCC CGAAGCCATC GACAAGGCCG AGGACCGCCT GAAGTTCAAG
GACGCGATGA CCAAGATCGG CCTCGGCTCG GCGCGCTCCG GCATCGCCCA CTCGATGGAC
GAAGCCTGGG CCGTGCAGAA GTCGGTCGGC TTCCCGACGG TGATCCGCCC CAGCTTCACG
CTCGGCGGCA CCGGCGGCGG CATCGCCTAC AACCCGGAAG AGTTCGAGAC CATCTGCAAG
CGCGGCATCG AAGCCTCGCC GACCAACGAG CTGCTGATCG AAGAGTCGCT GCTCGGCTGG
AAAGAGTATG AGATGGAAGT CGTGCGCGAC AAGGCCGACA ACTGCATCAT CGTCTGCTCG
ATCGAGAACC TCGACCCCAT GGGCGTGCAC ACCGGCGACT CGATCACCGT GGCCCCTGCG
CAGACGCTCT CCGACAAGGA ATACCAGATC CTGCGCAACG CCTCGCTGGC CGTGCTGCGC
GAGATCGGCG TCGATACCGG CGGCTCGAAC GTGCAGTTCT CGATCAACCC GAAGGACGGC
CGCATGGTCG TCATCGAGAT GAATCCGCGC GTGTCGCGTT CGTCGGCGCT GGCCTCCAAG
GCCACGGGCT TCCCGATCGC CAAGGTCGCG GCCAAGCTGG CCGTGGGCTA CACGCTCGAC
GAGCTGCGCA ACGAAATCAC GGGCGGCGCC ACGCCCGCGT CGTTCGAGCC GTCGATCGAC
TACGTGGTCA CCAAGATCCC GCGCTTCGCT TTCGAGAAAT TCCCGCAGGC CGATTCGCGC
CTGACCACGC AGATGAAGTC GGTGGGCGAG GTGATGGCCA TGGGCCGCAC CTTCCAGGAG
TCGTTCCAGA AGGCGCTGCG CGGCCTCGAA GTGGGCGTGG ACGGCCTCAA CGAGAAGACG
CAGGACCGCG AAGTGCTCGA GAAGGAACTG GGCGAGCCCG GCCCTGAGCG CATCTGGTAC
GTGGGCGATG CCTTCGCCAT GGGCCTGAGC GTCGATGAAG TGTTCGCGCT GACCAAGATC
GACCCGTGGT TCCTGGTGCA GATCGAGGAG ATCGTGAAGA TCGAGCTCGA GCTCGAAACC
AAGTCGCTGG CCGACATCGA CCGCGACACG CTGCTCGCGC TCAAGAAGAA GGGCTTCTCG
GACCGCCGAC TCGCCAAGCA GCTCAAGACC ACCGACACGG CCGTGCGCGA AAAGCGCCGC
GCCCTCGGCG TGCGCCCGGT CTACAAGCGC GTGGATACCT GCGCGGCCGA GTTCGCGACC
AACACGGCCT ACATGTACTC GACCTACGAG GACGAGTGCG AAGCCGATCC CACCGACAAG
AAGAAGATCA TGGTGCTCGG CGGCGGCCCC AACCGCATCG GCCAAGGCAT CGAGTTCGAC
TACTGCTGCG TGCATGCCGC GCTCGCGATG CGCGAGGACG GCTACGAGAC CATCATGGTC
AACTGCAACC CCGAGACCGT GTCGACCGAC TACGACACCT CCGACCGCCT GTACTTCGAG
CCGCTCACGC TCGAGGACGT GCTCGAGATC GTCGACAAGG AAAAGCCGCT CGGCGTGATC
GTGCAGTACG GCGGCCAGAC GCCGCTGAAG CTCGCGCTCG ACCTCGAGGC CAACGGCGTG
CCGATCATCG GCACCTCGCC CGACATGATC GACGCGGCCG AAGACCGCGA GCGCTTCCAG
AAGCTGCTGC ACGAGCTGGG CCTGCGCCAG CCGCCGAACG CCACGGCGCG CACCGAGCCC
GAGGCGCTCG AAAAGGCCGC GGCGCTGGGC TATCCGCTGG TGGTGCGCCC GAGCTACGTG
CTCGGCGGCC GCGCGATGGA AATCGTGCAC GAGCAGCGCG ACCTCGAGCG CTACATGCGC
GAGGCGGTGA AGGTCAGCAA CGATTCGCCG GTGCTGCTCG ACCGCTTCCT CAACGACGCC
GTCGAATGCG ACGTCGACTG CATCCGCGAC GCCGAGGGCC AGACCCTGAT CGGCGGCGTG
ATGGAGCACA TCGAACAGGC CGGCGTGCAC TCGGGCGACT CCGCCTGCTC GCTGCCGCCC
TACAGCCTGA GCGCCGAAAC CATTGCCGAA CTGAAGCGCC AGAGCGCCGC GATGGCCGCC
GCGCTCAACG TGGTGGGCCT GATGAACGTG CAGTTCGCGA TCCAGCAGAA GGACGGCAAG
GACGTCATCT ACGTGCTCGA AGTGAACCCG CGGGCTTCGC GCACCGTGCC CTACGTGAGC
AAGGCCACCG GCATCCAGCT CGCCAAGGTG GCGGCGCGCT GCATGGCCGG CCAGTCGCTC
AAGTCGCAGG GCGTGACCAA GGAAGTCACG CCGCCGTACT TCAGCGTGAA GGAAGCCGTG
TTCCCGTTCG TCAAGTTCCC TGGCGTGGAC ACCATCCTCG GCCCCGAGAT GAAGTCGACC
GGCGAAGTCA TGGGCGTGGG CAGGACCTTC GGCGAGGCCT TCGTGAAGTC GCAGCTCGGT
GCCGGCACGC TGCTGCCGAA GTCGGGCAAG GTCTTCATCT CGGTGAAGAA CAACGACAAG
GCGCGCGCCG TGGAAGTGGC GCGCGGCCTG GTCAAGCTGG GCTTCGAGAT CATCGCGACC
AAGGGCACGG CCGCCGCCAT CGGTGCCGCG GGCATTGAAT GCGCGACGGT GAACAAGGTG
ACCGAGGGCC GCCCGCACAT CGTGGACATG ATCAAGAACA ACGAGATTGC GCTGGTCATC
AACACGGTGG AAGAGCGCCG CAACGCGATC AACGATTCGC GCCAGATCCG CACCTCGGCG
CTGCTGGCCC GCGTGACCAC CTTCACCACG ATCTTCGGCG CCGAAGCCGC GGTCGAGGGC
ATGGGCTTCA TGGACGAGCT CGGCGTGATC TCGGTGCAGG AGATGCACGC GCAGCTGGCT
GCCGCCTGA
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| Protein sequence | MPKRSDLQSI LIIGAGPIII GQACEFDYSG VQACKALREE GYKVILINSN PATIMTDPAT
ADVTYIEPIT WQTVEKIIAK ERPDAILPTM GGQTALNCAL DLWRHGVLDK YTGAATNKPV
ELIGATPEAI DKAEDRLKFK DAMTKIGLGS ARSGIAHSMD EAWAVQKSVG FPTVIRPSFT
LGGTGGGIAY NPEEFETICK RGIEASPTNE LLIEESLLGW KEYEMEVVRD KADNCIIVCS
IENLDPMGVH TGDSITVAPA QTLSDKEYQI LRNASLAVLR EIGVDTGGSN VQFSINPKDG
RMVVIEMNPR VSRSSALASK ATGFPIAKVA AKLAVGYTLD ELRNEITGGA TPASFEPSID
YVVTKIPRFA FEKFPQADSR LTTQMKSVGE VMAMGRTFQE SFQKALRGLE VGVDGLNEKT
QDREVLEKEL GEPGPERIWY VGDAFAMGLS VDEVFALTKI DPWFLVQIEE IVKIELELET
KSLADIDRDT LLALKKKGFS DRRLAKQLKT TDTAVREKRR ALGVRPVYKR VDTCAAEFAT
NTAYMYSTYE DECEADPTDK KKIMVLGGGP NRIGQGIEFD YCCVHAALAM REDGYETIMV
NCNPETVSTD YDTSDRLYFE PLTLEDVLEI VDKEKPLGVI VQYGGQTPLK LALDLEANGV
PIIGTSPDMI DAAEDRERFQ KLLHELGLRQ PPNATARTEP EALEKAAALG YPLVVRPSYV
LGGRAMEIVH EQRDLERYMR EAVKVSNDSP VLLDRFLNDA VECDVDCIRD AEGQTLIGGV
MEHIEQAGVH SGDSACSLPP YSLSAETIAE LKRQSAAMAA ALNVVGLMNV QFAIQQKDGK
DVIYVLEVNP RASRTVPYVS KATGIQLAKV AARCMAGQSL KSQGVTKEVT PPYFSVKEAV
FPFVKFPGVD TILGPEMKST GEVMGVGRTF GEAFVKSQLG AGTLLPKSGK VFISVKNNDK
ARAVEVARGL VKLGFEIIAT KGTAAAIGAA GIECATVNKV TEGRPHIVDM IKNNEIALVI
NTVEERRNAI NDSRQIRTSA LLARVTTFTT IFGAEAAVEG MGFMDELGVI SVQEMHAQLA
AA
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