| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2580 |
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| Symbol | |
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| ID | 7970057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2723135 |
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| End bp | 2723629 |
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| Gene Length | 495 bp |
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| Protein Length | 164 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793167 |
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| Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_002944472 |
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| Protein GI | 239815562 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0953206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCCG CGTTCAACCT CCGCGTGGGC GAGGGCTGGG ACGTTCACCA GCTGGTGGCG
GGACGCAAGC TGATTCTCGG CGGCGTGGAG GTTCCGCACA CCACCGGCCT GCTGGGGCAT
TCGGATGCCG ACGTGCTGCT GCATGCCATC ACCGACGCCT TGTTCGGTGC GGCGGGCCTG
GGCGACATCG GCCGGCATTT TCCCGACACC GACGCGCAGT TTCGCGGCGC CGATTCGGCC
GTGCTGCTCG GCGAAGCGGC ACGCCGCGTG CGCGCTGCGG GCTGGGAGAT CGGCAACGTC
GACAGCACGG TGATTGCGCA GGCGCCCAAG CTGGCGCCGC ACATCCCGGC CATGTGCCGG
CGCATCGCCC AGGTGCTGGG CCTCGCGCCC GAGCAGGTCA ACGTGAAGGC CAAGACGGCC
GAAAAGCTCG GCCCGGTCGG CGAAGGCCGC GCGATGGAAG CGCGCGCGGT GGTGCTGCTG
CACCGCCAGG GCTGA
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| Protein sequence | MTAAFNLRVG EGWDVHQLVA GRKLILGGVE VPHTTGLLGH SDADVLLHAI TDALFGAAGL
GDIGRHFPDT DAQFRGADSA VLLGEAARRV RAAGWEIGNV DSTVIAQAPK LAPHIPAMCR
RIAQVLGLAP EQVNVKAKTA EKLGPVGEGR AMEARAVVLL HRQG
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