| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2539 |
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| Symbol | |
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| ID | 7970016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2681004 |
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| End bp | 2682707 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793126 |
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| Product | beta-lactamase |
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| Protein accession | YP_002944431 |
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| Protein GI | 239815521 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.470437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGAGCG ATCTCGACAG TCTCGTCGAA GCCTCGATGC AGGAATGGAA GGTACCGGGA
CTCGCGCTGG CCGTCATCCA GGATGGCGAG ATCGCCGTGC TCAAGGGCTA TGGCGTGCGC
GACACCGACA CGGGCCTGCC CGTGACCATC GACACGCAAT TCCTGCTGTG CTCGATCACC
AAGTCGTTCA CCGCGGCCGG TCTCGGCCTG CTGGTGGACG AACGCAAGCT CGACTGGGAC
CGGCCGGTGC GCGAGGTGAT TCCCGAATTC CGCCTGCACG ATCCGGTGGC GACCGAGCGG
CTGACCGTGC GCGACCTGCT GTGCCACCAC AGCGGGCTGC CGCGGCATGA CTGGATCCAC
ATGCCCGGCG ACCTGAGCAA CGCGCAGATG CTGGCCGCCC TCAGGCACCT GGCGCCGAAC
AAGGACCTGC GCGACGCCTT CCAGTACTCG AACCTCGGCT ACCTGGCCGC CGGCATGGTC
ACCGAGCGCA TCAGCGGCCG GAGCTACCAG GACTTCACCA CCGAGCGCCT GATGAAGCCG
CTGGGCTTCA GCCACTTCGG CTTCTCCATC GAGGCCCTCG CGGCCGCCGA AGACGCCGCC
CGTCCGCATG CGATGGATGG CGACGAGCGC TACCGCACGC CGCTGTCGCC GATCCGCGCG
ACGCCGGCCG GCGGCATCAA CGCCTCGGTG GCCGATCTTG CGAAATGGGC GCGCTTTCTC
CTCGATGGCA AGGCGCATGG GCAGCAACTG CTTTCGACCC AGGCGCTGCG CGAAATGACG
ATCCCGCGCG TGCACATGGG GCGCTCCCCC TACGCCGAGA TCGGCGACTC GCACTACGGC
CTCGGCCTCT TCTGCGAGCA GTACCGCGGC GAGCGCATCG TCGCGCACTC GGGCTCGTGG
ACCGGCTGGA GCACGCTCAT GACGATGCAG CCCGAGCGCC GTGCAGGCGT CGTGGTGCTG
ACGAACCGCA CGCCGGGGAG CGTGCACGCG ATCCTCACCT ATGCGGTGCT CGACCGCATC
TGCGGCCGCG AGACGGTCGA CTGGTTCGGG CGCCTGGCAC CCAAGCGCAG GCAGGCCATC
GAACAGCAGG CGCTCGACAG GAAGGTGAGC GCGGAAGTCC GCAGGAGCGG AACCCAGCCG
AGCCATCCGC TCGACGAGCA TGTCGGCGAC TACGAGCATC CGGCCTACGG GCGCCTGCGC
ATCGACCGGG AGGCGGACGG GCTCGCATGG CGCTGGCGCG GTGTCGAGGA GAAGCTCGAG
CACCGCCACT ACGACGTGTT CATCACCCCC GACCGCCCGA CGGTGCTGCA CCCCAGCAAC
CGGACGCTCA CCTTCCGCTA CGACCGGCAA GGCCGCATCG ACCGCATCGA GATACCGTTC
GAGGAGATGG TGGACGACAT CGTGTTCCAT CGCGTCGCAG CCGGCGACGT GCTGGACCCG
GGCTTTCGGC AGCTGTGCGC CGGCGACTAC CTGCACAGCG GCCGCGTGAT CGAGATCAGG
CTCGATGCGC GCGGCGAGCT CGCCATGACG ATCCCTGGCC AGCCGACCTA TCGCTTGCTG
CCGGCCGATG GACGCAGCTT CCGCGTCGAC ACGCTCGATG GCTTCGGCGT GGAATTCCGC
CGGCCTTGGC CCGACGCAGT AGACGCGATG ATCTTCCACG AACCCCGCGT CACCGCGCTC
GCCCCGAAGG TGGCAAAGCC CTAG
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| Protein sequence | MWSDLDSLVE ASMQEWKVPG LALAVIQDGE IAVLKGYGVR DTDTGLPVTI DTQFLLCSIT
KSFTAAGLGL LVDERKLDWD RPVREVIPEF RLHDPVATER LTVRDLLCHH SGLPRHDWIH
MPGDLSNAQM LAALRHLAPN KDLRDAFQYS NLGYLAAGMV TERISGRSYQ DFTTERLMKP
LGFSHFGFSI EALAAAEDAA RPHAMDGDER YRTPLSPIRA TPAGGINASV ADLAKWARFL
LDGKAHGQQL LSTQALREMT IPRVHMGRSP YAEIGDSHYG LGLFCEQYRG ERIVAHSGSW
TGWSTLMTMQ PERRAGVVVL TNRTPGSVHA ILTYAVLDRI CGRETVDWFG RLAPKRRQAI
EQQALDRKVS AEVRRSGTQP SHPLDEHVGD YEHPAYGRLR IDREADGLAW RWRGVEEKLE
HRHYDVFITP DRPTVLHPSN RTLTFRYDRQ GRIDRIEIPF EEMVDDIVFH RVAAGDVLDP
GFRQLCAGDY LHSGRVIEIR LDARGELAMT IPGQPTYRLL PADGRSFRVD TLDGFGVEFR
RPWPDAVDAM IFHEPRVTAL APKVAKP
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