| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2485 |
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| Symbol | |
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| ID | 7969550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2622923 |
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| End bp | 2625478 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793068 |
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| Product | hypothetical protein |
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| Protein accession | YP_002944377 |
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| Protein GI | 239815467 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.652813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGCAT CCGCAGGCTC GCTTGTCGTC TCGCTCGGGC TAGACGCTGC CGAGTTCACG
AAGGGGCTGT CGAAGTCCCA GTACCAAGCG GCTCAGTTCG CTCAAAATCT GAGCAACCAA
ATCGCCGTCG GCATCGTAAA AGCCGAGGTG GCGATGCGTG CCTTGGGAGA CGCTGCCGCA
TTCGCGATTC GCACAATCCC TGAACTCATC AATCAAGCAG GCAATTTCCA AGACCTGGCC
GAGAAAACAG GCGCGAGCGC GGCGGCCATG GCCGGCTTCG CCGTGTCCGC TGCTGTCGGC
GGAACGAGCA TGGACACCGT GGCCGCGGCG AGCATTCGCC TGACCAAGGG CCTGACCGGT
GTCGACGACG AGTCCAAGGC GGCCGGCGCC GCCATCGGCG CCCTCGGGCT CAACCTCTCG
GATTTCAAGA AGCTGGCGCC AGAGGCCCAG ATCGAGGCGG TGTCCAAGGC GCTCGGCGGG
TTTGCTGATG GCGCCGGGAA GACTGCCGTT GCCGTTGCCC TGTTCGGCAA AGCCGGCGCG
GATCTGCTGC CTTTCCTGAA GGCCCTGTAT GAGGCCGGCG GCCAGCAGAA CATCCTCACC
GCCGAGCAAA TCAAACTCGC CGACGACTAC GCTGACCGCC AGGCGAAGTC GCGCGCCGAA
CTGATCCTCC ACGCCCAAGC CATTGCCACG CAGTTCATCC CCGCCCTCAC GGCGGTGCAG
AACGCCGTCC GCGAGGTCAT CGGCGACCTG ATCAGCGCCA ACGGTGCGCA GAAGGATTTC
GCTCTGAACC TGGTCATCCT CGACTGGGCC GAGAAAGTGA CGCTCGCGCT GGCCACTGTC
GGCGAAACCG CTGTCGCGCT GGCGAAGACG CTCCGCGCCG TGGGTGGCAG CTTCGAATCC
GTCTATGCCG ACTCGAAGCT GCTATCGGCC CTGACGCCGA CGGGCGCGGT CAAGGCGGCG
ATTTCAGGGG ACAGCCTCTC GTCGCTGCTG GCCGAGCGGA ACGCCAAGGC CAAGGAAGCG
AACGACCGAT ACGTCGACCT CTGGAACTAC GACGGTGCCA AGGCGACGAA GGCCATCAAG
AAGGCGTTCG CGGACCAACG CGCGGTGATC ACTGGCGCGG CTGACCCGGA AACGCAGCGG
CTCATGGCCC GATCGCGCGC TGCGCAAGGC GTGCTTCCAA CCCTCAAGTT CGATGGTGCA
GCAGCCAAGG GCGGCGGCGG GGGCAAGGAC GACCCGACGA ACAAGATTCT CGAAAACCAG
CTGAAGGCGC TCGAGAACGC CGCACGGGAA GAGGAAGACA TCCTGCGCTC GCGCAACAAG
ATGCTCGACC TCTACAACGG CGAGAACTTG ATTTCGACGC AGGCCTACTA CGAGGGCAAG
CGCGTTGCCC AGTCGGCCGC AGTGTCGTCG CAACTCGCCC TGTACGACCA GGAAATCGCC
GCACTGCAGA AGTTCCAGGC TGCGGCCGGC AAGCAGACCG ATCGCGAATC CGCCCAGGGC
AAGATCAACG ACCTGATCGA AAAGAAGAAG CGTCTGACGC GCGAGGCCGG CGAAACGGCG
ATCGAGTGGG GCTTCAAGGA GCGCAAGGCC CTCGAAGACC TCGCCAAGCA GATGAACAGC
GTCAACGCCG AGGTGCTGGA GCTCACCGGC AACCTCAGTG CGGCCACCAA GATCCGTCTC
GAAGACCAGT TCGGCGACAT CACCAAGCGC CTCACCGCCA ACGGCGACAC CGCCGGACTG
GCGCAAGTTG ATCGGCTTAA GCAGCTGAAG CAGGCGCAGG CCGACTACGG CCAGCAATCC
GAAACCGTCA GCCGGATCAC CGAAGGGCTG CGGATCGAGG AAGAGCGCAT CACCCTGGCC
CGCCAGCTTG GCACCACGGG TGAACTCGAA TCCCTGGCGA AGCTCGGCGA GTCGCGCAAG
GCCGCAGTCG CCCAGCTGCA GTCCATCGTT GCGGCGCAAG AAGCCATCGC GCGCGCTTCG
GGCAATCCAG CATTGGTGCA GAGCGCCGAG CGCGCCCGGC TCGAGCTGGA AAAGCTCGCG
GCCACGATCG ACCCCCTCGC CGACAAGTTC AACACGCTGT TTGCGGATGC CGCGGGCTCC
GCTTTCTCGG ACTTCATCAA CGGCACCAAG ACCGCGAAGG AAGCCTTCAA GAGCTTCACC
GACACGATCT TCAAGGAACT CACGAACCTG ATCGTCAAAG ACCTGTTCAA GCAGTTGTTC
AGCGGCGGTG GCACTGGCAC CGGTGGCGCT GGCTTCAACT TCGGCAGCCT GTTGTCCGGC
CTCTTCGGCG GCGGCAAGGC GGCCGGCGGC AGTGTGGCGC CATTCGGCAT GCACCGCGTG
AACGAGCAGG GCCCGGAACT GCTCGACGTC AACGGCAAGC AGTACCTCAT GAACGGCAGC
CGCAATGCCC GCATCACGCC GAACAACCAA CTCGGCGGCG GCATGAACTA TTCGCCGACC
TTCATCCTTG ACCAGCCCGC CAGCCGCGCC ACCCAAGAGC AGCTGAGCGC GGTCGCTTAC
CGCGGCGCTC GCCGTGCCAT GGAGCGCACA TCATGA
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| Protein sequence | MAASAGSLVV SLGLDAAEFT KGLSKSQYQA AQFAQNLSNQ IAVGIVKAEV AMRALGDAAA
FAIRTIPELI NQAGNFQDLA EKTGASAAAM AGFAVSAAVG GTSMDTVAAA SIRLTKGLTG
VDDESKAAGA AIGALGLNLS DFKKLAPEAQ IEAVSKALGG FADGAGKTAV AVALFGKAGA
DLLPFLKALY EAGGQQNILT AEQIKLADDY ADRQAKSRAE LILHAQAIAT QFIPALTAVQ
NAVREVIGDL ISANGAQKDF ALNLVILDWA EKVTLALATV GETAVALAKT LRAVGGSFES
VYADSKLLSA LTPTGAVKAA ISGDSLSSLL AERNAKAKEA NDRYVDLWNY DGAKATKAIK
KAFADQRAVI TGAADPETQR LMARSRAAQG VLPTLKFDGA AAKGGGGGKD DPTNKILENQ
LKALENAARE EEDILRSRNK MLDLYNGENL ISTQAYYEGK RVAQSAAVSS QLALYDQEIA
ALQKFQAAAG KQTDRESAQG KINDLIEKKK RLTREAGETA IEWGFKERKA LEDLAKQMNS
VNAEVLELTG NLSAATKIRL EDQFGDITKR LTANGDTAGL AQVDRLKQLK QAQADYGQQS
ETVSRITEGL RIEEERITLA RQLGTTGELE SLAKLGESRK AAVAQLQSIV AAQEAIARAS
GNPALVQSAE RARLELEKLA ATIDPLADKF NTLFADAAGS AFSDFINGTK TAKEAFKSFT
DTIFKELTNL IVKDLFKQLF SGGGTGTGGA GFNFGSLLSG LFGGGKAAGG SVAPFGMHRV
NEQGPELLDV NGKQYLMNGS RNARITPNNQ LGGGMNYSPT FILDQPASRA TQEQLSAVAY
RGARRAMERT S
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