Gene Vapar_2479 details

Gene Information

• Locus tag: Vapar_2479
• ID: 7969544
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2620418
• End bp: 2620957
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 644793062
• Product: phage protein, HK97 gp10 family
• Protein accession: YP_002944371
• Protein GI: 239815461
• TIGRFAM ID: [TIGR01725] phage protein, HK97 gp10 family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.119601
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAGTT CTGTAACGGT GAAGGTCGAG GGCCTGAGGC AACTCGGCGA TCGCATGAAG 
ACGCTTTCGG AAGACGTCAA CAAGCGAATC AGCCGCGCGG CGACCGCGGC TGGCGCGGCG 
GTAATCAAAA AGGCGGCACA GGATCTTGTG CCAGTCAAAA CCGGTGCCCT GAAGAAGGGG 
ATCGTCGTCA AGCGAATCCC AAAGTCGGAG ACGGGTCTGA CGAGCGAGCA CATCGTCACG 
GTGTCCTCGC GAGAAATGAA GAAGTACGTC GCGAAGTCGC GGGCCGCGGT CGTCGAACTA 
CAGGGGCCCA TCGCCCCAAC CACCGTCAAC GGCAAAACCT ACCGCGCCAA GAAGTTGCTT 
GGTCGGAAGG AAAGCTACAC CTCGCTCGGC GACTTCTTCT ACGCACACTT CGTGGAGTAC 
GGGACTTCAA AGATGGCGGC CAAACCCTTT CTTCGACCGG CTTACGACCA AAACAAGGGA 
AAGGCCGTGG AGGCCATCAA AGACCGCATC GCGAAGCGAC TCACAAAGGC GGGCGTATGA 

 

Protein sequence

MASSVTVKVE GLRQLGDRMK TLSEDVNKRI SRAATAAGAA VIKKAAQDLV PVKTGALKKG 
IVVKRIPKSE TGLTSEHIVT VSSREMKKYV AKSRAAVVEL QGPIAPTTVN GKTYRAKKLL 
GRKESYTSLG DFFYAHFVEY GTSKMAAKPF LRPAYDQNKG KAVEAIKDRI AKRLTKAGV