| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2230 |
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| Symbol | |
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| ID | 7969944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2377874 |
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| End bp | 2378776 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792818 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002944131 |
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| Protein GI | 239815221 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.994871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCAAC CTTCCCTCAT GAGCGGCCAG CGCATTCTCG TGACCGGCGG CGGCACCGGC
CTGGGCCGGG CCATGGCCGA GCGCTTCCTG GGCCTGGGCG CCGATGTGGC CATCTGCGGC
CGGCGCCAGT CGGTCTGCGA GGAAACCGCG GCCGCGTGGC GCCAGCAGTT TCCGGGGCGC
CGCATCGACA CCTTTGGCGT GGACATCCGC GTGGCGCAGA GCGTCGACGA GATGGTCGAG
AGCCTGTTCC AGGGCGGCGG GCTCACAGGG CTCGTCAACA ATGCCGCCGG CAACTTCGTC
GCGCCGACCG AGAGCCTCTC GCCGCGCGCC TTCGACGCCA TTGCGAACAT CGTCTTCCAT
GGCAGCTTCT ACGTCACGCA GGCCGTGGGC AAGCGCTGGG TGGCGGAAGC GAAGGCCGGC
AAGTGGCAGC AGGGCGACGC GATGCGCAGC GTGATGAGCA TCATCGTCAC CTGGGTCGAC
AACGGCAGCC CCTACGTGGT GCCATCGGCC ATGAGCAAGG CCGGCATCGA GGTCATGACC
AAGTCGCTCG CGGTGGAGTG GGCGCGCCAT GGCATTCGCC TGAACGCCGT CGGGCCGGGC
GAGATTCCGA CCGAGGGCAT GAGCAAGCGC CTCAATCCCG GCGAGGAGCC CGGCGCGCGC
AGCAAGAAGA CCAACCCGAT GGCGCGCACC GGCCGCATGA GCGAGCTGCA GAACCTTGCG
GCCTTTCTCA TGGCGCCGGG CCAGTGCGAC TGGCTCACCG GCCAGAGCAT CATGATGGAC
GGCGGCAACG CGCTGGCCAC GGGCGGCAAC TTCTACGAGC TGCGGCAGTG GAGCGACGAC
GACTGGCAGG CCGCGCGCGA ACGCATCGAG GCGCAGAACC AGAAGGACAA GGCGCAGCGC
TGA
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| Protein sequence | MFQPSLMSGQ RILVTGGGTG LGRAMAERFL GLGADVAICG RRQSVCEETA AAWRQQFPGR
RIDTFGVDIR VAQSVDEMVE SLFQGGGLTG LVNNAAGNFV APTESLSPRA FDAIANIVFH
GSFYVTQAVG KRWVAEAKAG KWQQGDAMRS VMSIIVTWVD NGSPYVVPSA MSKAGIEVMT
KSLAVEWARH GIRLNAVGPG EIPTEGMSKR LNPGEEPGAR SKKTNPMART GRMSELQNLA
AFLMAPGQCD WLTGQSIMMD GGNALATGGN FYELRQWSDD DWQAARERIE AQNQKDKAQR
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