| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2163 |
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| Symbol | |
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| ID | 7973850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2309257 |
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| End bp | 2310927 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792751 |
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| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
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| Protein accession | YP_002944064 |
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| Protein GI | 239815154 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.666563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAG TGGAAGTCAA GGTGCCGGAC ATCGGCGATT TCGATGAAGT CGCGGTGATC
GAGGTGCTCG TGAAGGTGGG CGACACGGTC AAGGCCGAGC AGTCGCTCAT CACCGTGGAA
TCGGACAAGG CGTCGATGGA GATCCCGTCG TCGACTGCCG GTGTGGTCAA GGAACTGAAG
GTCGAGGTCG GCAGCAAGGT GAAGGAGGGC TCGGTGGTGC TCGTGCTGGA GGCCGATGGT
GCCGCCGCCG CTGCGCCGGC GCCTGCAGCG GCCCCGGCCC CTGCGGCGGC CGCCCCGGCA
CCCGCAGCTG CGGCGCCTGC ACCGGCTGCC GCGCCTGCGG CCTCGGGCCC GGTCGAAGTC
AAGGTGCCCG ACATCGGCGA CTTCAAGGAC GTTGCGGTCA TCGAGCTGCT GGTGAAGCCC
GGCGACGCGA TCGCGGCCGA CCAGTCGCTG ATCACGGTGG AGTCGGACAA GGCCTCGATG
GAGATTCCGT CGTCGGCGGC CGGCGTGCTC AAGGAGCTCA AGGTCAAGGT GGGCGACACG
GTCAACATCG GCGACCTGAT CGCGATATTG GAAGGCGCGG CAGGTGCCGC GGCACCGGCG
CCCGCGCAAG CTGCTGCAGC CGCGCCCGCT GCGGCAACCG CCAGTGCACC CGCGCCGGCC
GCCGCATCGC CGGCACCGGC TGCAAGCCCG GCTGCCGCAG CCGCGCCGCA TGAGCCGACG
GTCGCGCCCA CTGGCAACCT GCCGCATGCC TCGCCCTCGG TGCGCAAGTT CGCACGCGAG
CTCGGCGTGC CGCTCGAGGA GGTCAAGGGC TCCGGTCCCA AGGGCCGCAT CACGCAGGAA
GACGTCCAGG GCTTCACCAA GGCCGTGATG AGCGGCCAGG CCAGCACCAA GGCCTCGGCG
GCCAAGGCGC CGGCCGGCGG CGGCGCGGAC GGCGCCGCGC TCGGCCTCAT TCCCTGGCCC
AAGGTCGACT TCACGAAGTT CGGCACGGTC GAGCGCAAGG ACCTGTCGCG CATCAAGAAG
CTCAGCGGCG CCAACCTGCA CCGCAACTGG GTGATGATCC CGCACGTCAC CAACAACGAC
GAGGCCGACA TCACCGAGCT CGAGGCCTTC CGCGTCTCCA CCAACAAGGA GAACGAGAAG
TCGGGCATCA AGGTCACGAT GCTGGCCTTC GTGATCAAGG CGGTGGTGGC GGCGCTGAAG
AAATTCCCCG ACTTCAACGC CAGCCTCGAC GGCGACCAGC TGGTCTACAA GCAGTACTTC
CACATCGGCT TCGCGGCCGA CACGCCCAAC GGGCTCGTGG TGCCGGTGCT CAAGGATGCC
GACAAGAAGG GCATCCTGCA GATCAGCCAG GAAATGGGCG AACTCGCCAA GAAGGCGCGC
GACGGCAAGC TCGGCTCGGC CGACATGCAG GGCGGCTGCA TGTCGATCAG CTCGCTCGGC
GGCATCGGCG GCACGCACTT CACGCCCATC ATCAACGCCC CCGAAGTGGC CATCCTCGGT
CTCTCCAAGG GCCAGATGAA GCCGGTGTGG GACGGCAAGC AGTTCGTGCC GCGCCTCACG
CTGCCGCTGT CGCTGTCGTA CGACCACCGC GTGATCGATG GTGCCCTGGC TGCGCGCTTC
AACGCCTACC TGGGCCAGGT GCTCGCGGAC TATCGCCGAA TCCTGCTATG A
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| Protein sequence | MAAVEVKVPD IGDFDEVAVI EVLVKVGDTV KAEQSLITVE SDKASMEIPS STAGVVKELK
VEVGSKVKEG SVVLVLEADG AAAAAPAPAA APAPAAAAPA PAAAAPAPAA APAASGPVEV
KVPDIGDFKD VAVIELLVKP GDAIAADQSL ITVESDKASM EIPSSAAGVL KELKVKVGDT
VNIGDLIAIL EGAAGAAAPA PAQAAAAAPA AATASAPAPA AASPAPAASP AAAAAPHEPT
VAPTGNLPHA SPSVRKFARE LGVPLEEVKG SGPKGRITQE DVQGFTKAVM SGQASTKASA
AKAPAGGGAD GAALGLIPWP KVDFTKFGTV ERKDLSRIKK LSGANLHRNW VMIPHVTNND
EADITELEAF RVSTNKENEK SGIKVTMLAF VIKAVVAALK KFPDFNASLD GDQLVYKQYF
HIGFAADTPN GLVVPVLKDA DKKGILQISQ EMGELAKKAR DGKLGSADMQ GGCMSISSLG
GIGGTHFTPI INAPEVAILG LSKGQMKPVW DGKQFVPRLT LPLSLSYDHR VIDGALAARF
NAYLGQVLAD YRRILL
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