| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2118 |
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| Symbol | |
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| ID | 7973804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2260795 |
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| End bp | 2262909 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792705 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002944019 |
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| Protein GI | 239815109 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGA CCATTTTTCC GCTCGCGCTG GGCGCGGCGT TTCCCTGGCT GGCCACGACG
GCCCACGCCG CCGACGAACA ACAACCCGCG CTTCCCGCCG TGTCGGTCAC CGCCACCCGC
GACAGCGGCC TTGGCGCGCC CGTCGCAACA GGTTCGAACC TGGGCATCAC GGCCTTACAG
ACACCCGCGA GCGTGGGCAC CATCACGCGC GAGCAGCTTG AGCAGCGCGG TGATGCGAGC
GTCGTCGAAG CCGTCACCCG CTCGACCGGC ATCAGCAGCC TGGCCCATCC CGGCAACGGA
GGCTCCTCCC TCGCCGCACG CGGATTCACC GATTCGACCT CCGTGATGCG GCTGTACGAC
GGCACGCGCC AGTACGGCGG ACTCGGCGTG ACCTTTCCGT TCGACACCTG GTCGCTCGAT
CGCATCGAAG TTCTTCGCGG GCCGGCATCG GTCATCTACG GCGACGGCGC CATCGGCGGC
GTGGTCAACG TGATCCCCAA GAAGCCCCAC CGCGGGCCGA TTGAGAACGA GGTGCAAACC
ACCATCGGGA CCGACAACAC GCGAAGACTC GGCTTCGGCA GCGGCGGAGC CATCAACGAC
AAACTGTCGT ACCGGCTGGA TGTCAGCGGC GATCGCTCCG ACGGCTGGGT GGACAGTGGC
GATTCGCGCA ACCGGGCGTT CTCGGGGGCG GTTCAACTCG ACGTCTCTCC CGAGTTCAGC
CTGCGGCTCA GCCATGCCGA GGGCAGGCAG AACCCGATGC GCTACTTCGG AACACCGCTG
GTCAACGGGC AGCAGCTCCC GGCACTGCGC GAGAAGAACT ACAACGTCGG CGACAGCACC
ATCCAGTACC AGGACCGCTG GACCGAGCTG GCGGCGCAAT GGACGCCAAG CGCGGACACC
ACGGTGCGAA GCCGCCTGTA CCGCATCGAC AGCCAGCGCT ACTGGCGCAA TGCGGAGTCG
TATGCCTACA ACCCGCGAAC AGGCCTCATC GACCGATCCG GCAACACGCA GATCCGGCAC
GACCAATCGC AGACGGGAAA CACCACCGAT GCGACCTTCA AGGGCACCCT GTTCGGCTTG
AAGAACCAGG CGTCGGTGGG GTTCGACATC AACTCCAGTT CTTTCACGCA CACGAACAAC
ACCTATGTCG GCTCGTCTCC ATCGGTCGAC CCACTGAACC CAACCCCTGG CTACTTCGCC
AGCAGCGTGC CCTTCATCCC GCGCTACCGC AACGAGGCGA GGCAGTCGGC GGTGTTCGCG
GAGGATCGAC TCGAACTGAG CGATCGGTGG TCGCTGGTGG CGGGCCTGCG CCATGACCAC
GCACGCATAT CGCGCCGGGA CCTGGTGGCC GGCACAGCGG CGTTCGGCAA GTCCTTCTCC
CACACCGGGT GGCGCATCGG GACCGTGTTC GAGATCGTCC CGAACCTTGT GCTGTACGCG
CAGTACGCCA AGGCCGCGGA CCCGGTGAGC GGGCTGCTCA TGCTGTCGCC GGCGAACAGC
AAGTTCGATC TCGCCACGGG CAAGCAGGCC GAGGTCGGAG TGAAGCAGAC CTTCTGGGAC
CAGCGCGGTG AATGGAGCCT GGCGGCGTAC CACATCACCA AGAACAACCT GGTCACGCGG
GATCCCAGCA ACCCGTCGCA GAGCATCCAG GTCGGTGAGC GCTCATCGCG CGGCCTCGAA
GCCAACGTCG CAATGGCCTT CGCTTCCGGC TGGCAGCTGG ATGCCAACGC GGCCGTGCTG
CGCGCGCGGT ATGACGACTT CTCCGAAGCG GTGCGGGGCG TTGCCGTTTC GCGCGCGGGG
AATGTGCCGA CCGATGTGCC CGAGCGGCTT GCGAATGTGT GGGTGAGCTG GAACTTCCTG
CCGAAATGGA CGCTGAGCTC CGGCCTGCGC TATGTGGGCA AGCGGTATGC GGACACCGCC
AACACCCTGA CGCTGCCCGC CTACACCACG ACGGACCTGG CGCTTAGGTG GCAGGTCACG
CCCGACACCA CGGTGACGCT TCGCGGCTTC AATGTCTTCA ACAAGCGCTA CTACACGACG
GCGTACTACA CCAACACGCA ATGGTTTGTC GGAGAGGGGC GCCGGGTCGA GCTGACCGCC
CATCACCGGT TCTGA
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| Protein sequence | MKKTIFPLAL GAAFPWLATT AHAADEQQPA LPAVSVTATR DSGLGAPVAT GSNLGITALQ
TPASVGTITR EQLEQRGDAS VVEAVTRSTG ISSLAHPGNG GSSLAARGFT DSTSVMRLYD
GTRQYGGLGV TFPFDTWSLD RIEVLRGPAS VIYGDGAIGG VVNVIPKKPH RGPIENEVQT
TIGTDNTRRL GFGSGGAIND KLSYRLDVSG DRSDGWVDSG DSRNRAFSGA VQLDVSPEFS
LRLSHAEGRQ NPMRYFGTPL VNGQQLPALR EKNYNVGDST IQYQDRWTEL AAQWTPSADT
TVRSRLYRID SQRYWRNAES YAYNPRTGLI DRSGNTQIRH DQSQTGNTTD ATFKGTLFGL
KNQASVGFDI NSSSFTHTNN TYVGSSPSVD PLNPTPGYFA SSVPFIPRYR NEARQSAVFA
EDRLELSDRW SLVAGLRHDH ARISRRDLVA GTAAFGKSFS HTGWRIGTVF EIVPNLVLYA
QYAKAADPVS GLLMLSPANS KFDLATGKQA EVGVKQTFWD QRGEWSLAAY HITKNNLVTR
DPSNPSQSIQ VGERSSRGLE ANVAMAFASG WQLDANAAVL RARYDDFSEA VRGVAVSRAG
NVPTDVPERL ANVWVSWNFL PKWTLSSGLR YVGKRYADTA NTLTLPAYTT TDLALRWQVT
PDTTVTLRGF NVFNKRYYTT AYYTNTQWFV GEGRRVELTA HHRF
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