Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2024 |
Symbol | |
ID | 7969817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2167997 |
End bp | 2168908 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792621 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002943935 |
Protein GI | 239815025 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0238191 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTTTTCG ACCTGACCGA CCTGCGCCTC TTCGTTGCCA CGGCCGAGCT CGGCAATCTC ACGCGCGCGG CCGAGCGGCA GCACCTGTCG CTTGCGGCGG CCAGCGCGCG CATCAAGGCG CTCGAAAACC AGGCCGGGCT GCAGCTGCTG CAGCGCGAAG CGCGCGGCGT GCGCCTGCTG CCGCCGGGGG AAGCCTTCCT GCACCACGCG CGCCTCGTGC TGCACCAGAC CGAGCAGCTG CGCGCCGACC TGCTCGAATA CGGCGGCGGC CTGCGCGGCC ACCTGCGCGT GTTCGCCAAC ACCACGGCGG TGACCGATTT CCTGCCTGAA ATCTTGCCGG GCTTTCTTGC GCGCAATCCG CGCATCAACG TCGACCTTCA GGAAAAACCG AATGCTCAGA TCCCGCGCGG CGTGCTCGAC GGCCGCGCCG ACATCGGCAT CGTGGCGGGC CGCGTCGACA CGCTGGGCCT CGAAGCGATC CACTTCAGCA CCGACCGGCT GGTGCTCGCC ACCTCGCGCA AGCACCGCTT CGCGAAGCGC CGCAGGATTT CATTTGCGGA AACGCTCGAC GAAGACGCCA TCGGCATGCA GCAAGGCAGC ACCTTGCAGA CCTTTCTGGC GCAGATCACC GACAACCTCG GCAAGCGGCA GAAGCTGCGC ATCCAGCTCG GCAGCTTCGA CGCCATGTGC CGGATGATCG GCAGCGGCGT GGGCATTGGC GTGGTGCCGG AGTCGGCGGC GCGGCGCAAT CAGGAAAGCA TGCGGCTCGC GCTGATCGAT CTCAGCGACG CATGGTGCGT GCGGGAGCGC TACCTGCTGG TGCGCGACCG GGCGGCACTG CCGATCTATG CGCAGGCGCT GGTCGAGACG CTGTGCCAGC ACTACGCCGT GGAGCAGGCC GCTGCCGGCT GA
|
Protein sequence | MLFDLTDLRL FVATAELGNL TRAAERQHLS LAAASARIKA LENQAGLQLL QREARGVRLL PPGEAFLHHA RLVLHQTEQL RADLLEYGGG LRGHLRVFAN TTAVTDFLPE ILPGFLARNP RINVDLQEKP NAQIPRGVLD GRADIGIVAG RVDTLGLEAI HFSTDRLVLA TSRKHRFAKR RRISFAETLD EDAIGMQQGS TLQTFLAQIT DNLGKRQKLR IQLGSFDAMC RMIGSGVGIG VVPESAARRN QESMRLALID LSDAWCVRER YLLVRDRAAL PIYAQALVET LCQHYAVEQA AAG
|
| |