| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2022 |
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| Symbol | |
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| ID | 7969815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2164492 |
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| End bp | 2166243 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792619 |
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| Product | poly(R)-hydroxyalkanoic acid synthase, class I |
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| Protein accession | YP_002943933 |
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| Protein GI | 239815023 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
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| TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.721451 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCAAC AAGCAACGGG GGCCGACGCG TTCGCGCCCC TCCAGCAGGC TCTTTCGGAG
GGATGGACCA AGGCGCTGGA ATCGCTCCAG CAGTCCGCCG TACAGGGGGC CTCGGCCTTC
AACGGCGGCG GCACGCCGCT GTGGCAATTG CCTCCGGGGG CAACGCTGCC TGAATTGCCG
AAAGTCTCCA TCGCGCCCGA GAAGCTGCAG TCGATCCAGC AGCAATACAT GGCCGAGGCC
ACCGAGCTCT GGCGCCGCGG CTTAGACGCC AGGCCCGAGA GCGACAGGCG CTTTGCCGGC
GAAGCCTGGG GCAGCAACCC GCTCGCGGCC TTCTCGGCGG CGGTCTACCT GCTCAATGGC
CGCACCCTGC TCAGCATGGC CGAGGCCATC GACGCCGACG AAAAGACCAA GGCGCGCATG
CGTTTTGCGG TCGAGCAGTG GATGGCGGCC GCATCGCCCA GCAACTCGCT CGCCTTCAAC
GCAGAGGCGC AGAAGAAAGC CATCGACACG CAGGGCGAGA GCATTGCCAA GGGCATCCAG
AACCTGCTGC ACGACGTGAA GCAGGGCCAC CTCAGCATGA CCGACGAAAG CGCCTTCGAA
GTGGGGCGCA ACGTGGCCAC CACCGAGGGC GCCGTGGTGT TCGAGAACGA GTATTTCCAA
CTGCTCGAAT ACAAGCCGCT CACGGCCAAG GTCTACGAGC GGCCGTTCCT GCTGGTGCCG
CCGTGCATCA ACAAGTTCTA CATCCTCGAC CTGCAGCCCG AGAACTCCCT GATCCGCTAT
GCCAACGAGC AGGGCCACCG CGTGTTCGTG GTGAGCTGGC GCAACCCCGA CGAGTCGCTG
GCCCACGCCA CCTGGGACGA CTACATCGAG AATGCCGCCA TCAAGGCGAT CCACCTCGTG
CAGGAGATCG GCGGCAGCAA GCAGATCAAT GCGCTGGGCT TCTGTGTGGG CGGCACCATC
CTGAGCACCG CGCTGGCCGT GCTGGCGGCG CGCGGCGAAA AGCCGGCCGC TTCGGTCACG
CTGCTCACCA CCTTTCTCGA CTTCAGCGAC ACCGGCATCC TCGACATCTT CGTGGACGAG
GCGATGGTGG CGTACCGCGA AATGCAGCTG GGCAAGGGCG GCCTGCTGCC GGGCATGGAC
CTGGCCTCGA CCTTCAGCTT CCTGCGGCCC AACGACCTGG TCTGGAACTA CGTGGTCGGC
AACTATCTGA AGGGCGAGAC CCCGCCGCCC TTCGACCTGC TCTACTGGAA CAGCGACGCC
ACCAACCTGC CGGGCCCGTT CTACACCTGG TACCTGCGCA ACACCTACCA CGAGAACAAG
CTCGCCAAGC CCAATGCGCT CACGGTCTGC GGCGAGAAGA TCGACCTCGG CAGGATCGAC
ATCCCGGCCT ACATCTACGG CTCGCGCGAA GACCACATCG TGCCGATCGG CGGCGCCTAT
GCCTCCACGC AGCTGCTGCC GGGCAAGAAG CGCTTCGTCA TGGGCGCCTC GGGCCACATC
GCCGGCGTGA TCAATCCGCC CGCCAAGAAA AAGCGCAGCC ACTGGACGCG CGAGGACGGC
AAGTTCCCCA AGACCCAGGC CGAATGGCTG GCCGGCGCCA CCGAGCATCC CGGCAGCTGG
TGGACCGACT GGGCCCAATG GCTCAAGGGC CATGCGGGCA AGCAGGTCCC GGCGCCCAAG
GCCTACGGCA ACGGCAAGGC CTACAAGGCC ATCGAGCCGG CGCCGGGACG CTACGTCAAG
GCCAGGGCCT GA
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| Protein sequence | MKQQATGADA FAPLQQALSE GWTKALESLQ QSAVQGASAF NGGGTPLWQL PPGATLPELP
KVSIAPEKLQ SIQQQYMAEA TELWRRGLDA RPESDRRFAG EAWGSNPLAA FSAAVYLLNG
RTLLSMAEAI DADEKTKARM RFAVEQWMAA ASPSNSLAFN AEAQKKAIDT QGESIAKGIQ
NLLHDVKQGH LSMTDESAFE VGRNVATTEG AVVFENEYFQ LLEYKPLTAK VYERPFLLVP
PCINKFYILD LQPENSLIRY ANEQGHRVFV VSWRNPDESL AHATWDDYIE NAAIKAIHLV
QEIGGSKQIN ALGFCVGGTI LSTALAVLAA RGEKPAASVT LLTTFLDFSD TGILDIFVDE
AMVAYREMQL GKGGLLPGMD LASTFSFLRP NDLVWNYVVG NYLKGETPPP FDLLYWNSDA
TNLPGPFYTW YLRNTYHENK LAKPNALTVC GEKIDLGRID IPAYIYGSRE DHIVPIGGAY
ASTQLLPGKK RFVMGASGHI AGVINPPAKK KRSHWTREDG KFPKTQAEWL AGATEHPGSW
WTDWAQWLKG HAGKQVPAPK AYGNGKAYKA IEPAPGRYVK ARA
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