| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1992 |
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| Symbol | |
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| ID | 7969785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2138710 |
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| End bp | 2141244 |
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| Gene Length | 2535 bp |
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| Protein Length | 844 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792590 |
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| Product | cytochrome c oxidase, subunit I |
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| Protein accession | YP_002943904 |
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| Protein GI | 239814994 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.394035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACGC AGGCTCCCAA GGAAGATCCT TCGAATCTGC CGCCGCGCCC CGCAGGCGAG
CGCGAGGCCC TCGAGCGCGC GTGGCGCCCG CCCACCGGCT GGCGGCTCTT CTCGGCGGTG
AACAACACGC GCATCGGCGT GTTCTACATC GCCACCGCCA TGCTCTTCTT CGTGCTGGCC
GGCATCCTGG CGCTGATGAT GCGCACGCAG CTCGCGGTGC CGGACAACCA CCTGATCGAC
GCGGGCACCT ACAACCAGCT CTTCACGATG CACGGCACCG TGATGATGTT CCTGTTTGCG
GTGCCCATCG TCGAGGCCGT GGCCATCTAC CTGCTGCCGG GCATGCTGGG CGCGCGCGAC
CTGCCCTTTC CGCTGCTCTC GGCCTATGCG TTCTGGGCCT ATGCCATCGG CGGCATCGCC
TTCTTCTGCA CGCTGTTCTT CGGCGTGTCA CCCGATGGCG GCTGGTTCAT GTATCCGCCG
CTCACCGGCA AGGAGTTCTC GCCCGGGCGC GGCGCCGACT GGTGGCTGCT GGGCATCGGG
TTCATCGAGA TCTCGGCCAT TGCGGGCGCC ATCGAGCTGA TCGTGGGCGT GCTGTTCACG
CGCGCGCCCG GCATGACGCT GATGCGCATG CCGATCTTCG CCTGGGCCAT GCTGGTCACC
GCGCTGATGA TCGTCTTCGC GTTTCCCGCG GTGATCGCGG CGACCATGCT GCTGGAGCTG
GAGCGCGCGC TCGACTGGCC CTTCTTCATT CCCGCGCGCG GCGGCGATCC GCTGCTGTGG
CAGCACCTGT TCTGGTTCTT CGGCCACCCG GAGGTCTACA TCATCTTCCT GCCCGCGGCC
GGCATGGTGT CGATGATGGT CGCCACGCTC GCGGGCACGC CGCTGGTGGG CCACCGGGCG
GTGGTGCTGG CGCTCATCGG CGTGGGCGTG GTGAGCTTTG CGCTGTGGGT GCACCACATG
TTCACCGCGG GCCTGGGCAA TCTCTCGCTG CTGGTGGTGT CGGCCGCGAG CTTCATCGTC
GCCATACCGA GCGGCGTGCA GGTGTTCGCG TGGATCGCCA CCTTCTGGCG CGGCCGCGTC
GCGCTCGATG CGCCCACGCT GTTCCTCCTG GGCTTTCACT TCATCTTCGT GCTGGGCGGC
CTCACGGGCG TGATGGTGGC AGTGCTGCCC TTCGACTGGC AGGCGCACGA CAGCTACTTC
ATCGTCGCGC ACCTGCACTA CGTGCTCATC GGCGGCATGG TGTTTCCGGT GTTCGCGGGC
TTCTACTACT GGGCGCCGGT CTTCAACGGC CACCGGCTTT CCGAGCGCTG GGGCCGCTGG
GTGTTCGGGC TCATGTTCGG CGGCTTCAAC CTCGCCTTCT TTCCGATGCA CATCGCGGGC
ATGCTCGGCA TGCCGCGGCG CGTGTACACC TACAGCGCCG ACCTGGGCTG GAACGCGCTC
AACATGCTGT CCACCCTTGG CGCCTACACG CTGGCGGCCG GTGTGCTGCT CTTCACGGTG
GACGCGGCGC GCACGCTGCG CCGGCCCGGG CAGGACCATG GCAATCCCTG GCGCGCCGGC
ACGCTCGAAT GGCTGCCGCC GCGCGAATAC GGCGTGCGCA GCATTCCGCA GGTGGATTCG
CGCTATCCGC TGTGGCGGCG GCTCGCGCTG CCGCAGGAGG TGGAGGCCGG TCGGCACTGG
CTGCCGGGCA CCGTCTTCGG CGGCCGCGAA ACGCTGGTGA CCAGCCCGCG CGATGCGCGG
CCGATGCACC TGCTGCGCCT GCCGACCGAC AGCTGGTGGC CGCTGGCGGC AGCCGCCGGC
ACCGCGGGTT TCTTCCTGCT TCTCACGGTG TCGCAGACGC TGCCTGCGCT GGCCTGCGGC
GTGATCGCGG TGGCATGCAT CCTGCGCTGG CTGTGGGACT CCGACCGTCC GCCGCCGGTG
GCCACGGTCG ACGTCGGCCA TGGCGTGCAG CTGCCGGTCG GCGCGCGGGG GCGGGCATCG
CACTCGTGGT GGGCCATGGT CGTGCTGATT GCGGTGGACA TGACGATCTT CGTGTCGCTG
CTGTACACCC ATGTGCACCT GTCGATGGCC AGCGACGTGT GCCCGCCGCC CGGTGCCGCG
CTGCCGCCCC TGCGCTGGCC GCTGGGCGCG GCGCTGCTGC TCGCGGCCGG CTCGGCCGCG
ATGGCGCTGG CCGCGCGCAG GCTGCATGCA GCAGATCCGC GCCGCCAGCG CAGGCTGCGC
ATGCTTGCGG CACTGGCCAT GGCCTGCGCG GCCGGTGCGG CGGCGCTCGA CATCGGCGGC
CACCAGCTCG CCGGGCTCGA TCCGCGCGCC CAAGGCTGGA GCGCATCGGT TGGCATGCTG
CTGGGCTACC AGGCCTTCCA CATCGCAGTG CTGATGCTGA TGGGTGGCTA TGTGCTCGTG
CGTTCGTGGT CGGGCAGGCT GCAGCCCGCG GCCCGCGCGA CCATCGACAA CACCGCGCTG
ATGTGGCACT GCGTGACAGC GCAGGGAATC ATCGGAGCGC TTGCGGTGCA GGGCGTGCCG
CGGCTCCTGG GCTGA
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| Protein sequence | MTTQAPKEDP SNLPPRPAGE REALERAWRP PTGWRLFSAV NNTRIGVFYI ATAMLFFVLA
GILALMMRTQ LAVPDNHLID AGTYNQLFTM HGTVMMFLFA VPIVEAVAIY LLPGMLGARD
LPFPLLSAYA FWAYAIGGIA FFCTLFFGVS PDGGWFMYPP LTGKEFSPGR GADWWLLGIG
FIEISAIAGA IELIVGVLFT RAPGMTLMRM PIFAWAMLVT ALMIVFAFPA VIAATMLLEL
ERALDWPFFI PARGGDPLLW QHLFWFFGHP EVYIIFLPAA GMVSMMVATL AGTPLVGHRA
VVLALIGVGV VSFALWVHHM FTAGLGNLSL LVVSAASFIV AIPSGVQVFA WIATFWRGRV
ALDAPTLFLL GFHFIFVLGG LTGVMVAVLP FDWQAHDSYF IVAHLHYVLI GGMVFPVFAG
FYYWAPVFNG HRLSERWGRW VFGLMFGGFN LAFFPMHIAG MLGMPRRVYT YSADLGWNAL
NMLSTLGAYT LAAGVLLFTV DAARTLRRPG QDHGNPWRAG TLEWLPPREY GVRSIPQVDS
RYPLWRRLAL PQEVEAGRHW LPGTVFGGRE TLVTSPRDAR PMHLLRLPTD SWWPLAAAAG
TAGFFLLLTV SQTLPALACG VIAVACILRW LWDSDRPPPV ATVDVGHGVQ LPVGARGRAS
HSWWAMVVLI AVDMTIFVSL LYTHVHLSMA SDVCPPPGAA LPPLRWPLGA ALLLAAGSAA
MALAARRLHA ADPRRQRRLR MLAALAMACA AGAAALDIGG HQLAGLDPRA QGWSASVGML
LGYQAFHIAV LMLMGGYVLV RSWSGRLQPA ARATIDNTAL MWHCVTAQGI IGALAVQGVP
RLLG
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