Gene Vapar_1971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1971 
Symbol 
ID7969764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2112061 
End bp2112726 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content71% 
IMG OID644792569 
Producthypothetical protein 
Protein accessionYP_002943883 
Protein GI239814973 
COG category[R] General function prediction only 
COG ID[COG1926] Predicted phosphoribosyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.359462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTTCG AGTTTTTCAG GAACCGGCAG CAGGCGGGCC GCGTGCTCGC TCAAAGGCTC 
GCCGCCTATG CGCACAAGCC GGACGTCACT GTGCTGGCCC TGCCGCGCGG CGGCACGCCG 
GTGGCCTACG AAGTGGCCAA GGCATTGCAT GCGCCGCTCG ACGTGCTCGT GGTGCGCAAG 
CTCGGCGTGC CGGGACACGA GGAATACGCG ATGGGTGCCA TCGCGGGCGG CGGCGAGCGG 
GTGCTCGATG AAGACCTCGT GCGCGAACTC GGCATCGGCG CGAAGGAGGT CGACGAGGTC 
ATGCGCAACG AGCAGGACGA ACTCGAGCGG CGCGAACGCG CCTACCGCGG CGACCGGCCC 
GCGCCCGACC TGCATGGCCG CACCGCCATC CTGGTGGACG ACGGCCTGGC CACTGGCGCG 
ACCATGCGCG TGGCCGTGCG CGCGGTGCGC CGGCAGGCGC CGGCCCGCGT GGTGGTTGCA 
GCGCCCGTGG CATCGCGCGA AGCCTGCGCG CTGCTGCTCG GCGAAGCCGA CGACGTGGTC 
TGCGCCGAGA CGCCGGAGCC TTTCCTCGGC GTGGGGCGCT GGTACCTGGA CTTCTCGCAG 
ACCAGCGACG AGGAGGTCTG CCACCTGATC GAAGACGCCA ACCCTCATGG CGCGCTTCCT 
GCCTGA
 
Protein sequence
MAFEFFRNRQ QAGRVLAQRL AAYAHKPDVT VLALPRGGTP VAYEVAKALH APLDVLVVRK 
LGVPGHEEYA MGAIAGGGER VLDEDLVREL GIGAKEVDEV MRNEQDELER RERAYRGDRP 
APDLHGRTAI LVDDGLATGA TMRVAVRAVR RQAPARVVVA APVASREACA LLLGEADDVV 
CAETPEPFLG VGRWYLDFSQ TSDEEVCHLI EDANPHGALP A