| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1950 |
|---|
| Symbol | |
|---|
| ID | 7969743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2089165 |
|---|
| End bp | 2089968 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792549 |
|---|
| Product | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
|---|
| Protein accession | YP_002943863 |
|---|
| Protein GI | 239814953 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
|---|
| TIGRFAM ID | [TIGR02311] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCC TCAACGCCTT CAAGACAGCC CTGGCCGCCA AACAGCCGCA GATCGGCCTC
TGGCTCTCGA TGGCCGACCC CTACATGGCC GAGGTGAGCG CCACCGCCGG CTTCGACTGG
CTGCTGATCG ACGGCGAGCA CGCGCCCAAC GACCTGCGCT CGACGCTGGC CGCATTGCAG
GCCGTGGCGC CCCACCGCGC CCAGCCCGTG GTGCGCGCGG TGCAGGGCGA CACGGCGCTC
ATCAAGCAAC TGCTCGACAT CGGCGCCAAG AACCTGCTGG TGCCCATGGT CGACACGGCC
GAACAGGCGC GCGCGCTGGT GTCGGCCACG CGCTATCCGC CGCTGGGCAT CCGCGGCGTC
GGCAGCGCCG TGGGCCGCGC CTCGCAGTGG AGCGCTCGCA CCGACTACCT CGACATCGCC
GATGCGGAAG TCTGCCTGCT GGTGCAGGCC GAAACCGTGG CGGCGCTTGC CAACCTGGCG
CAGATCTGCG CGGTGGACGG CATCGACGGC GTCTTCATCG GCCCGGCCGA CCTGGCCGCG
TCGATGGGCC ACCGCGGCCG GCCCGGCCAT CCGGAGGTGC AGGCCGCCAT CGAGGCCGCC
ATGCGCACCA TCGTGGCCTC GGGCAAGGCC GCGGGCACGC TGACCTCGGA CCCGAAGCTG
GCGCGGCGCT ACCTGGAGCT GGGCTGCAGC TTTGTTGCGG TGGGTGTCGA CGTGCTGCTG
TTCGCGGGCG CGGCCCGCAA GCTTGCGGCC GACTTCAGCG GCGCGCCGCC GGCCGCAGAG
CCCGCGCCGC GCGCGGCCTA CTGA
|
|---|
| Protein sequence | MPALNAFKTA LAAKQPQIGL WLSMADPYMA EVSATAGFDW LLIDGEHAPN DLRSTLAALQ
AVAPHRAQPV VRAVQGDTAL IKQLLDIGAK NLLVPMVDTA EQARALVSAT RYPPLGIRGV
GSAVGRASQW SARTDYLDIA DAEVCLLVQA ETVAALANLA QICAVDGIDG VFIGPADLAA
SMGHRGRPGH PEVQAAIEAA MRTIVASGKA AGTLTSDPKL ARRYLELGCS FVAVGVDVLL
FAGAARKLAA DFSGAPPAAE PAPRAAY
|
|---|
| |