| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1898 |
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| Symbol | |
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| ID | 7971077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2029940 |
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| End bp | 2030812 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792499 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002943813 |
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| Protein GI | 239814903 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAGC ACAGGTTGCC CAAGCGCGGG CTGGCACTGG CCGGCACGGC GCTCGTGCTG
GCCATGGCGG TCGCGGGCCT CGACGGCGCC CGGGCTTTCA CGACGCCGCC GCTGTCGGGC
CTGCCCAAGG GACCGGTGCT CGCCCATGCG ATCGAGCGCG GCAAGCTGGT CGTCGGCGTG
CGCCGCTATC CGCGCCCTGC CCCACCCGAG GCGCCAACGC CGCCGGAACC CGACGGTTTC
GACGCCACGC TCGCACGGCA ACTGGCGGCT TCGCTCGGCG TGCCGCTGGA GCTGGTCGGC
CTCGACCCTG CGGCGCAAGA GGCTGCGCTG CGCGAAGGCC GCGTCGACCT GCTGGTGGCG
GGTGTGCCCG CCCGATCGAC ACACGGTATC GCCGCCGCCC CCGGCAGCTA CGACACCGGC
CGCGGCCTGG TGGTCTCGCT CAGGCGCGGC AAGGTTCAGG AGCCATCTGC GCTGCGCGGC
GCATCGGTCT GCGTAGGCGA AGGTTCGGGC TACGCCGCCG CGGTGTCGCA GCGCTATGGC
GCGCAGCCGC GCAGCTATCC CTCTTCGGTG CATGCGGCGT CGGCCTTCAT GGCCGGCGAA
TGCGCGGCGC TCGCCGAGGA TGCCGAGGTG CTGGAACGGC TCATGCGAAG CGAGGAATGG
CGCTTCTACA AACCCCTGGC CGGCGACCTG CGTCCACCCT CGGATGCCGC CATCCGCCTG
CCCGAAGGCG ACGCCATGTC GCGCGATTAC CTGGCCGCCG CACTGCGCCA ATGGCGTGCC
GACGGTACGC TGGACAAGGT GCGCGGCGCG CGTGCGGGCA ACCTGCAGTT CGAGATCACG
CTGCTCAAGG ACGGCTTCGT CTGCCATTCC TGA
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| Protein sequence | MTEHRLPKRG LALAGTALVL AMAVAGLDGA RAFTTPPLSG LPKGPVLAHA IERGKLVVGV
RRYPRPAPPE APTPPEPDGF DATLARQLAA SLGVPLELVG LDPAAQEAAL REGRVDLLVA
GVPARSTHGI AAAPGSYDTG RGLVVSLRRG KVQEPSALRG ASVCVGEGSG YAAAVSQRYG
AQPRSYPSSV HAASAFMAGE CAALAEDAEV LERLMRSEEW RFYKPLAGDL RPPSDAAIRL
PEGDAMSRDY LAAALRQWRA DGTLDKVRGA RAGNLQFEIT LLKDGFVCHS
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