| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1889 |
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| Symbol | |
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| ID | 7971068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2021082 |
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| End bp | 2021888 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792490 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002943804 |
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| Protein GI | 239814894 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATCG CACTGGCCGC GGTTCTGGGC CTGGGCGCAG CTGCGGCGCA CGCCGACGCC
ACGCTCGATC GCATCAAGCA GCGCGGCAAG GTGGCCATCG GTGTGGTGGT GGGCGGCGGT
CCCTTCGGCT CGATCGATCC GGCCACGCAG CAGTTGGTGG GCTGGAACCC CGACCTGGCG
CGTGATCTTG CAAAGCAGCT CGGCGCCGAG GCCGAGCTGG TGCAGGTGCA GCCTTCGAAC
CGCGTGCAGT TCCTGCAGTC GGGCAAGGTC GACCTGCTGA TCGCCTCGAT GGAATACAAC
GCCGACCGCG GCGAAATCCT GGGCCATGCG CCCACGCCCT TCTACCGCGT GGGCGGCACC
GCCGCGGTAC TCAAGACCAG CGGCATCGCC AAGTGGGAAG ACCTGCGCGG CAAGGTGGTC
TGCGCCTCCC AGGGCAGCAG CTACGTGAAG CCGCTGCAGG AACAATACGG CGCGCAGGTG
CGCGGCTTCA AGACCTCTGC GGAATCGCTG CTCGCGCTGC GCGGCGGCAA CTGCGTGGCG
GCCGTGCACG ACGCCACGCT GATCCAGCCG CTCCTGCGCA ACAACGCCGA ATGGGCCGCC
TACGCGGCGC CGATCCGCGA CGAGATATTG CCCGCGCCCT CGGTGGTGTG GACCCGCAAG
GGCGAGGCCG ACACCATCGC CGCCGTCGAC AAGGTCGTGC AGCAATGGCA CCGCAGCGGC
TGGCTGATTG CCACCGAAAA GCGCAACGGC ATCGAGCCGC CGCAGCCGCT GCTGACCGAA
CTGCAGGCCA GGTTCAAGGC GCCCTGA
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| Protein sequence | MAIALAAVLG LGAAAAHADA TLDRIKQRGK VAIGVVVGGG PFGSIDPATQ QLVGWNPDLA
RDLAKQLGAE AELVQVQPSN RVQFLQSGKV DLLIASMEYN ADRGEILGHA PTPFYRVGGT
AAVLKTSGIA KWEDLRGKVV CASQGSSYVK PLQEQYGAQV RGFKTSAESL LALRGGNCVA
AVHDATLIQP LLRNNAEWAA YAAPIRDEIL PAPSVVWTRK GEADTIAAVD KVVQQWHRSG
WLIATEKRNG IEPPQPLLTE LQARFKAP
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