| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1887 |
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| Symbol | |
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| ID | 7971066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2019517 |
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| End bp | 2020338 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792489 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002943803 |
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| Protein GI | 239814893 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAGTG GGATCGCGCT TCCTCAAGGC AGCGCCCCTG CCATCGCCGC GGACGCCGGT
ACGCCCGCGT GGCGCAGGCC GTGGGCCCTG GCCGCGTGGG CCGCCTTGGC GCTCGTGGCT
TTCTGGGCCG CCACCGGCAC CACGCCCACG GCCTTCGTCC ATCTCTGGAC ATGGCTGCCC
GCACTGCTGC GCGGCCTTCT GGCGAACATC GAGATCAGCG TGCTCGCGAT GGCGCTGGGC
ACGCTGGCCG GGCTGCTGGT CGGGGCCGTG TCGCTCTCGC CGCTGCGGGT GCTGCGCGTC
GCCGCGCGCT GGTATGTGCA GGTCTTTCGC AATGCGCCCG TGCTGGTGCT GGTCTATTTC
ACGACCTATG TGTTCCCGTT CGAGCTGCAC CTGGTGTCGT GGACTTTTCC TTTCCCCGAC
TGGATCAAGG TGGTGCTGGG CCTGGCACTG CCGGCCAGCG CGAACGTGGC GGAGATTTTC
CGCGGTGCGA TCCAGTCGAT CCCGAGCGCG CAGTGGGAGG CCGCGCAATC GCTGGCCTTC
AGGCGCAGCG AGATCTTTCG CCTGATCGTG CTGCCGCAGT GCCTGCGCCG CATGCTGCCG
CCGTGGATGA ACCTCTATGC CAGCATCACC ATGAGCACGG CGCTGGCCTC GCTGGTGGGC
GTGCACGACG TGGTCGACAC GGCACAGATC GCGAGCAACA CGGTGGCGCG CACCGACTTC
ACCATCCTTG TCTATTTCAC GCTGCTGGGC TTGTTCTTCG CCTGCTGCTA TCCGATCGCG
CGCGCCACCC GCGCGCTGGA GCGTCGCCAT GACCGCCACT GA
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| Protein sequence | MASGIALPQG SAPAIAADAG TPAWRRPWAL AAWAALALVA FWAATGTTPT AFVHLWTWLP
ALLRGLLANI EISVLAMALG TLAGLLVGAV SLSPLRVLRV AARWYVQVFR NAPVLVLVYF
TTYVFPFELH LVSWTFPFPD WIKVVLGLAL PASANVAEIF RGAIQSIPSA QWEAAQSLAF
RRSEIFRLIV LPQCLRRMLP PWMNLYASIT MSTALASLVG VHDVVDTAQI ASNTVARTDF
TILVYFTLLG LFFACCYPIA RATRALERRH DRH
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