| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1856 |
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| Symbol | |
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| ID | 7970873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1987301 |
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| End bp | 1988179 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792457 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_002943772 |
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| Protein GI | 239814862 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.408733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAACT TCTCGCAGAA CCACGACTGG CTGTCGATCA ACACCGCCAC CATCCGCAAG
CAACTGGGCG CCGAGGTGCC GCTCGACCGC ATCATCGACC AGTGCGCCGA ACGCGGCATC
CGCGCGATCA GCCCCTGGCG CGACCAGGTG GCGGCCGTCG GGCTCGACAA GATCGCAAAG
CAGCTGAAGG CGCATGGCAT CGGCCTTTCG GGCTACTGCC GCGGCGGCTT CTTTCCGGCG
GCGAATGCGG CGGGCCTCCA GGCCGCGCTC GACGACAACC GCCGCGCTAT CGACGAGGCC
AAGACGCTCG ATGCGCCTTG CCTCGTGCTG GTGGTCGGCG CCCTGCCCGG CGCGCTCGAA
GGCAAGCCCG CCTACAAGGA CATCGCCCGC GCGCGCGGCG AGGTGCGCGA CGGCATTGCC
GCATCGCTCG AATACGCACG CGAAGTCGGC ATGCCGCTGG CCATCGAGCC GCTGCATCCC
ATGCAGGCGG CCGACCGCGC CTGCATCAAC ACGCTCGAAC ACGCGCTCGA CATCTGCGAC
GAGCTCGATG CGGGCAAGAG CGGCATGCTG GGTGTGGCGC TGGACATCTA TCACGTGTGG
TGGGATCCGA AGCTGCAGCA GCAGATCGCG CGCGCCGGCC GCGCGCGGCT GCTGGCGTAC
CACGTCTGCG ACTGGCTCAC GCCCACGCGC GACCTGCTCT CGGACCGCGG GATGATGGGC
GACGGCGTGG TCGAGCTCAA GAAGATCCGC GGCTGGGTCG AGGACGCGGG CTTCGCGGGG
TTCAGCGAAG TCGAGATCTT TTCGAATCTC GACTGGTGGC AGCGGGCCGG CAGCGAAACG
CTCGACGTGT GTATCGAACG GCACAGGCAA GCCGTCTAG
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| Protein sequence | MRNFSQNHDW LSINTATIRK QLGAEVPLDR IIDQCAERGI RAISPWRDQV AAVGLDKIAK
QLKAHGIGLS GYCRGGFFPA ANAAGLQAAL DDNRRAIDEA KTLDAPCLVL VVGALPGALE
GKPAYKDIAR ARGEVRDGIA ASLEYAREVG MPLAIEPLHP MQAADRACIN TLEHALDICD
ELDAGKSGML GVALDIYHVW WDPKLQQQIA RAGRARLLAY HVCDWLTPTR DLLSDRGMMG
DGVVELKKIR GWVEDAGFAG FSEVEIFSNL DWWQRAGSET LDVCIERHRQ AV
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