| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1850 |
|---|
| Symbol | |
|---|
| ID | 7970867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1982108 |
|---|
| End bp | 1983361 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644792451 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002943766 |
|---|
| Protein GI | 239814856 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.918758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCA CTTCCTCCCC GACAGCCACT CCCTCCACCA GCTTGCGCGG CGACGCACAG
CTCATCGGCC TGGTCGGCCT GGCCCATGCC ATCAGCCACT TCAGCCAGCT GATCCTGGCG
CCGCTGTTCC CCTGGCTGAA AGACGCGTTC AACGTGAGCT ACACCGAGCT GGGCGCGGTG
CTGACGGTGT TCTTCGTGGT CTCGTGCATC GTGCAGGCGG CCTCGGGCTT CATCGTCGAC
AAGCTGGGTC CGCGGCCGGT GCTGTTCGTG GGGCTGGGCG CGCTGGCCCT GGCGGCCTTC
GGCTATGCGC TGGCCCAGAG CTACTGGATG CTGCTGCTGT GCGCCGTCGT GGGCGGCATC
GGCAATGGCG TGTTCCACCC GGTCGACTAC ACGCTCTTCA ACCGCAAGGT GGCGCCGACC
CGCCTGGGCC ACGCCTACAG CGTGCACGGC ATCACCGGCA GCCTGGGCTG GGCGCTGGCG
CCGGCCTTCG TGGTGCCGAT CGCCATCGCT TTTTCATGGC GCGTGGCGCT GGCTTCGGCC
GGTGCGCTGG CCATCGTGGT GCTGCTGGTG CTCTGGGCCT ACCGCGGCGT GCTGGCGCTG
GACGTGAAGG CGGTGCACAA GGCCACCGGG CATGGCGAGC CGGCACCCGT CGGCGGCGAG
TTCGACTTCC TGCGCATTCC GGCCGTGTGG ATGTGCTTCG GCTTCTTTTT CTTCTACGCC
GTCGTGATCA GCGTGGTGCA GACCTTCGCG CCGGCGGCGG CGGGCCACCT GCACGCGGTG
CCGGTGGCGC TGGTGGCGGT GTGCCTCACG GTCTACATGG TGGCAAGCGC GGCCGGCATG
GTGGCGGGCG GCTTCCTGGC CTCGGATCCG TCGCGCTGCG AACGCATCGT GGGCATCGGC
TTCGGGGTGG CGGCCGCGCT GGCGCTGGTG CTGGCCTTTG CGCAGTTTCC GCCGGTGATG
GTGCCGGTGC TGTTCGGCGC CATGGGCTTC GTCTCGGGCG TTGCCGGCCC TTCGCGCGAC
CTGCTGGTCA AGCGCTCGAC GCCGCCCAAT GCCACCGGCC GCGTCTACGG CGTGGTGTAT
GCGGGCCTGG ACATCGGCCA GGCGCTCGCG CCGCTGGTGT TCGGCCGCTT GATGGACCAT
GGCCAGTACG CGAGCGTGAT CGCCGGCCTG GCGCTGGTGC AGGCCGTGCT GATTGCCAGT
GCCTTCAACG TGACGCGGGT GCGCCGCACG GCGCTGGTGC CGGCCTCGGC GTAA
|
|---|
| Protein sequence | MSSTSSPTAT PSTSLRGDAQ LIGLVGLAHA ISHFSQLILA PLFPWLKDAF NVSYTELGAV
LTVFFVVSCI VQAASGFIVD KLGPRPVLFV GLGALALAAF GYALAQSYWM LLLCAVVGGI
GNGVFHPVDY TLFNRKVAPT RLGHAYSVHG ITGSLGWALA PAFVVPIAIA FSWRVALASA
GALAIVVLLV LWAYRGVLAL DVKAVHKATG HGEPAPVGGE FDFLRIPAVW MCFGFFFFYA
VVISVVQTFA PAAAGHLHAV PVALVAVCLT VYMVASAAGM VAGGFLASDP SRCERIVGIG
FGVAAALALV LAFAQFPPVM VPVLFGAMGF VSGVAGPSRD LLVKRSTPPN ATGRVYGVVY
AGLDIGQALA PLVFGRLMDH GQYASVIAGL ALVQAVLIAS AFNVTRVRRT ALVPASA
|
|---|
| |