| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1800 |
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| Symbol | |
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| ID | 7970817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1935803 |
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| End bp | 1936798 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792401 |
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| Product | putative RNA polymerase, sigma 70 family subunit |
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| Protein accession | YP_002943716 |
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| Protein GI | 239814806 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.157774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGCTT CCAGCCCCCG TCGCGCACTG CCCGTGCGTC GGCCGGTGGG CCGGGGCAGG
GCCGTAGAGA GCGGCTCGCA GGGCTCGCCT GCGGCACCTG CTGCAGACCT GATTGCCGCA
ACAACCGATT TGCCCGGCGG CGAGGGCGCC GATGCCCTGA CAATCTACCT GCGCCAGGTG
CGGCGTACCG AACTCTTCAC GCCCGAAGAG GAATACCAGG CCGCATGCGC CGCGCGCGCC
GGCGACTTTG CCGCGCGGCA ATCGATGATC GAGCACAACC TGAGGCTGGT TGTGAACATC
GCCAAGGCCT ATCTGGGCCG GGGCGTACCG CTTTCCGATC TCATCGAGGA AGGCAATCTC
GGCCTGATGC ACGCCATCAC CAAGTTCGAG CCCGAGCGGG GCTTTCGCTT TTCCACCTAT
GCAACCTGGT GGATCCGCCA GTCGGTCGAG CGCGCCGTAC TGACCCAGGC GCGTGCGATC
CGCCTGCCGG TGCATGTGGT GCGCGAGCTG CAGCAGGTGC TGCGGGCCCG CCGCACGCTC
GAAGGCGATG CCGAGTTCCT GGCGCATCGG CCCGACGGCG TGCGCGTGGA GGACGTCGCC
GCATTTCTGG GACTGGAGGT GCAGGCGGTC GCGGAACTGC TGGCGCTGGC CGAGGCGCCG
CGCTCGCTCG ATGCCGGCGA CGCGCACGGA GACGAAGGCT TCACCCTGGC CGACACCGTG
GCGTCGGAGG ACGAGCAGGG CGACCCGACC GACGTCACGC ACACCCACGA GGTCGCGCGC
CTGCTCGATC AATGGGTCCA CGCACTGGAT GCTCGCGAGC GCGAGGTGCT GGAGGGCCGC
TATGGCCTGC ACGACCGCGA GCCCGAGACG CTCGAGGTGC TGAGCGTGCG CCTCGGGCTC
ACGCGCGAGC GCGTGAGGCA GATCCAGAAC GAGGCGCTGG CCAAGATGCG GCGCCAGCTG
ATCCGCTCGG GCGTGGGGCG CGACGCCTTG TTCTAG
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| Protein sequence | MAASSPRRAL PVRRPVGRGR AVESGSQGSP AAPAADLIAA TTDLPGGEGA DALTIYLRQV
RRTELFTPEE EYQAACAARA GDFAARQSMI EHNLRLVVNI AKAYLGRGVP LSDLIEEGNL
GLMHAITKFE PERGFRFSTY ATWWIRQSVE RAVLTQARAI RLPVHVVREL QQVLRARRTL
EGDAEFLAHR PDGVRVEDVA AFLGLEVQAV AELLALAEAP RSLDAGDAHG DEGFTLADTV
ASEDEQGDPT DVTHTHEVAR LLDQWVHALD AREREVLEGR YGLHDREPET LEVLSVRLGL
TRERVRQIQN EALAKMRRQL IRSGVGRDAL F
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