| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1733 |
|---|
| Symbol | |
|---|
| ID | 7974475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1864723 |
|---|
| End bp | 1865976 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644792332 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002943649 |
|---|
| Protein GI | 239814739 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.14636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACC GAATCGAAAT GCGCGGCGCC ACATCGCCAC CCGCCGCTGC GCCGCTCTCA
CCTTCTTCAA CGCACTGGCT CGGCGTGGCG CTGGTCGTGG CCGCCGGGGT CGTGGCGTCC
CTCCAGGTCG GCAAGGTCGC CATTGCCGTG CCGCAGTTGC GCACGGACTT CGGGCTCGAC
CTCACGATGG TCGGCTGGCT CATGGCAACG TTCTCGCTGC TGGGCGTGGT TGGCGCGGTG
CCGGTCGGCG CGTGGGTCGC GCGCGCGGGC GACAGGCGCC TGCTGGTGGC CGGCCTGCTG
GCCATTGCCA TCGGCAGCAT GGTCGGCGCA TGGGCACAGG GCATCGCAAT GCTGCTGATC
GGCCGCGTCG TCGAAGGCCT GGGTTTCGTG CTGATCACCA TTGCCGGCCC TTCGGTGCTG
CAGCGCATGG TCGCGCCCGG CGGCAAGGAC CTTGCCTTCG CGATCTGGAG CTGCTTCATG
CCCGCCGGGA TTGCCATCGC GCTCTTCAGC GGCTCGCTGC CGGGCAGCTG GCGCGGCTTG
TGGCTGGGCA ATGCCGCGCT TGCGGGCTTG ATCGCGGTGC TGGTGCTGGC GGGCGTTTCG
CGCGGCGCGA GTGCAAATAC CCGCGAAGCG CCGGTTTCGT GGCGCAGCAT GGCCCGCGAC
GCGGCCGCCA CGGCAAAGGC CAGCGCGCCG GCGCTGATCG CCGCTTCGTT CGTGATCTAC
AGCCTGCAGT TCTTCGCGCT CTTCAGTTTT CTGCCGGTGC TGCTGATCGA GCGCATGGGC
GTGGGCACGG CCACCGCCGG ACAGCTGAGC GCCGCGGCCT GCTGCGTCAA CGTGGCGGGC
AATCTTGCGG CCGGCATGCT GCTCCAGCGC GGCATCGCGC GCTGGCTGCT CGCGGCACTG
GCCAGTGCGG CGATGGGCAT CGCGTCCATC GGCATCTTCC TGCCGGTGCT CGGCGCAGTG
CCGGCCTTTG TGCTGTGCCT GGTTTTTTCG GGCGCGGGCG GCCTGCTTCC CGCAACGCTG
ATCGGCACCT CTCCCATCGT GGCACCGAGC ACGCGGCTGG TCCCGATGTC GATGGGCTTG
CTCATGCTGG GCAGCAATCT CGGCCAGATG ATCGGCCCCG TGATCGTGGG CGGTGCAGTG
GATTCGCTGG GCTGGCCGGC GGCCGCCGCC ATCGTCGCCC TGGCGGGCGC AATGGGCGTG
CTGCTTGCAC TGGGCCTGCG CCGCTCGATG GCGCGCGGCG GCCATCGGCT GTAG
|
|---|
| Protein sequence | MQNRIEMRGA TSPPAAAPLS PSSTHWLGVA LVVAAGVVAS LQVGKVAIAV PQLRTDFGLD
LTMVGWLMAT FSLLGVVGAV PVGAWVARAG DRRLLVAGLL AIAIGSMVGA WAQGIAMLLI
GRVVEGLGFV LITIAGPSVL QRMVAPGGKD LAFAIWSCFM PAGIAIALFS GSLPGSWRGL
WLGNAALAGL IAVLVLAGVS RGASANTREA PVSWRSMARD AAATAKASAP ALIAASFVIY
SLQFFALFSF LPVLLIERMG VGTATAGQLS AAACCVNVAG NLAAGMLLQR GIARWLLAAL
ASAAMGIASI GIFLPVLGAV PAFVLCLVFS GAGGLLPATL IGTSPIVAPS TRLVPMSMGL
LMLGSNLGQM IGPVIVGGAV DSLGWPAAAA IVALAGAMGV LLALGLRRSM ARGGHRL
|
|---|
| |