| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1720 |
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| Symbol | |
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| ID | 7974462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1851279 |
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| End bp | 1852040 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792319 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002943636 |
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| Protein GI | 239814726 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.033772 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGACC TCAAGGGCAA GACCGCACTC GTCACCGGCG CCAGCACCGG CATCGGCGCT
GCCGTGGCCA TTGCGTTCGC GGCGCGCGGC ATGCGCGTGG CGGTGCACTA CAACAGCTCG
GCCGACGCCG CCAACCAAGT CGTCGAGACC ATCCGCCAGG CCGGCGGCGA CGCCTTCACG
CTGCAGGCCG ACGTGCGCGA CACGGGCGCG ATCCGCGAGT GCGTCAAGCA GGCGGCATCG
CGCCTCGGCC GCATCGACGT GCTGGTGAAC AATGCCGGCA GCCTGGTCAA GCGCGTGCCC
ATCGCCGAGT TCGACGATGC GCTGTTCGAC GAGGTGATGC ACATCAACGC GCGCTCGGTG
CTCGCGTTTG CGCGCGAGGC GGTGCCGCTG ATGCGCACGC ACGGCGGCGG CAACATCATC
AACGTGACCT CGGTCGCGGC GCGCACCGGC GGCGGGCCGG GCGCCTACCT GTATGCGGGC
TCCAAGGGCT TCGTGAGCAC GGCCACGCAC GGGCTCGCCC GGGAACTCGT CGGCGACAGG
ATCCGCGTGA ACGCCGTGGC ACCGGGTGTC ATCCAGACGC CGTTCCAGGA CCGCTTCTCG
ACGCCCGCCA TGCTCGAATC GTTCCGCACC GCCATTCCCA TGGGCCGCAT CGGCTCGCCC
GACGAATGCG TGGGCGCCTT CCTCTACCTG GCTTCGGAGC AGCTCTCGGG CTACGTGACG
GGCCAGGTGA TCGAAGTGAA CGGCGGGCAG TACATGCCCT GA
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| Protein sequence | MEDLKGKTAL VTGASTGIGA AVAIAFAARG MRVAVHYNSS ADAANQVVET IRQAGGDAFT
LQADVRDTGA IRECVKQAAS RLGRIDVLVN NAGSLVKRVP IAEFDDALFD EVMHINARSV
LAFAREAVPL MRTHGGGNII NVTSVAARTG GGPGAYLYAG SKGFVSTATH GLARELVGDR
IRVNAVAPGV IQTPFQDRFS TPAMLESFRT AIPMGRIGSP DECVGAFLYL ASEQLSGYVT
GQVIEVNGGQ YMP
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