Gene Vapar_1703 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1703 
Symbol 
ID7974771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1832677 
End bp1833783 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content65% 
IMG OID644792302 
ProductS-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 
Protein accessionYP_002943619 
Protein GI239814709 
COG category[C] Energy production and conversion 
COG ID[COG1062] Zn-dependent alcohol dehydrogenases, class III 
TIGRFAM ID[TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.198202 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCA AAGCTGCCGT CGCCTGGAAA TCCGGAGCCC CGCTCACCAT CGAAACCGTC 
GACCTCGAAG GGCCGAAATT CGGCGAGGTG CTGGTCGAGA TCAAGGCCAC CGGCATCTGC 
CACACCGACT ACTACACGCT CTCGGGCGCC GACCCCGAAG GCATCTTCCC GGCCATCCTC 
GGCCATGAGG GCGCGGGCAT CGTGGTCGAC GTGGGCCCCG GCGTCACCAC GCTGAAAAAG 
GGCGACCACG TCATTCCGCT CTACACGCCC GAATGCCGCC AGTGCAAGTT CTGCCTGTCG 
CGCAAGACCA ACCTGTGCCA GCTGATCCGC GGCACGCAGG GCAAGGGCCT GATGCCCGAT 
GCCACCAGCC GCTTCAGCAT GGACGGCAAG CCCATCTTCC ACTACATGGG CACGAGCACC 
TTCAGCAACT ACACGGTCGC CCCCGAGATC TCGCTGGCCA AGATCCGCGA GGACGCGCCC 
TTCGACAAGG TCTGCTACAT CGGCTGCGGC GTGACCACCG GCATCGGCGC GGTGATCTTC 
ACGGCCAAGG TGGAAGCCGG CGCCAACGTG GTGGTGTTCG GCCTCGGCGG TATCGGCCTG 
AACGTGATCC AGGGCGCCAA GATGGTGGGC GCCGACAAGA TCATCGGCGT CGACCTGAAC 
CCCGAGCGCG AGGCCATGGC GCGCAAGTTC GGCATGACGC ACTTCCTCAA CCCGAAGGAG 
CACGAGAACA TCGTCGATGC GATCGTGCAG CTGACCGACG GCGGCGCCGA CTACAGCTTC 
GAGTGCATCG GCAACACCAA GGTGATGCGC CAGGCACTCG AATGCACGCA CAAGGGCTGG 
GGCCGCAGCA TCATCATCGG CGTGGCCGAG GCCGGCGCGG AGATCAGCAC GCGGCCGTTC 
CAGCTGGTCA CGGGCCGCAA GTGGGAAGGC TCGGCCTTCG GCGGCGCGCG CGGGCGCACC 
GACGTGCCCA AGATCGTCGA CTGGTACATG GAAGGCAAGA TCAACATCGA CGACCTGATC 
ACCCACACCA TGCCGCTCGA AGACATCAAC AAGGGCTTCG ACCTCATGAA GCGCGGCGAA 
TCGATCCGCG GCGTGGTTCT CTACTAG
 
Protein sequence
MKTKAAVAWK SGAPLTIETV DLEGPKFGEV LVEIKATGIC HTDYYTLSGA DPEGIFPAIL 
GHEGAGIVVD VGPGVTTLKK GDHVIPLYTP ECRQCKFCLS RKTNLCQLIR GTQGKGLMPD 
ATSRFSMDGK PIFHYMGTST FSNYTVAPEI SLAKIREDAP FDKVCYIGCG VTTGIGAVIF 
TAKVEAGANV VVFGLGGIGL NVIQGAKMVG ADKIIGVDLN PEREAMARKF GMTHFLNPKE 
HENIVDAIVQ LTDGGADYSF ECIGNTKVMR QALECTHKGW GRSIIIGVAE AGAEISTRPF 
QLVTGRKWEG SAFGGARGRT DVPKIVDWYM EGKINIDDLI THTMPLEDIN KGFDLMKRGE 
SIRGVVLY