Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1644 |
Symbol | |
ID | 7974712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1778203 |
End bp | 1779369 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644792244 |
Product | Mandelate racemase/muconate lactonizing protein |
Protein accession | YP_002943561 |
Protein GI | 239814651 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.348632 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGATCG TCGAAATCCG CGAGAAGACC ATCCCCATCA GCTCGCCCAT TCGCAACGCC TACATCGACT TTAGCAAGAT GACCCTGAGC CTTGTCGCGG TGGTCACCGA CGTGATCCGC GATGGCAAGC CCGTCGTTGG CTACGGCTTC AACTCGAACG GCCGCTACGG CCAGGGCAAG CTGATGCGCG AGCGATTCAT TCCGCGCATC ATGGAGGCGA AGCCGTCGTC CCTCGTCGAC GACAGCGGCG ACAACCTCGA CCCGCACAAG ATCTGGAACA CGATGTTCAC CAATGAGAAG CCGGGCGGCC ATGGCGAGCG CTCGGTGGCC ATTGGCACCA TCGACATGGC GGTGTGGGAC GCGGTGGCCA AGATCGAGGG CAAGCCGCTG TTCCAGTTGC TGGCCGACCG CTATGGCGAC GGCAAGCCCA ACCGCAAGAT CTTCGTCTAC GCGGCGGGCG GCTACTACTA CCCGGGGCAG GACCATGGGA AGCTCCAGGA CGAGATGCGC AGCTACATCG ACCGTGGCTA CACGGTCGTC AAGAAGAAGA TCGGCGGCGC CTCGCTCGAC GAAGACCTGC GCCGCATCGA CTCGATCATG GAAGTGCTGC AGGACGGCCA GAAGCTCTGC GTCGACGCCA ACGGGCGCTT CGACCTGGAA ACCGCGATTG CCTATGCCAA GGCCCTGTCG CAGTACGACC TCTTCTGGTA CGAGGAGCCG GGCGATCCGC TGGACTTCGA ATTGCAGGCA GCCTTGCGCA ATTTCTACAA GAACCCAATG GCCACTGGCG AAGATCTCTT CTCGATGCAG GATGCGCGCA ACCTGATCCG CTACGGCGGC ATGCGCCCGG ACCGCGATTG GCTGCAGTTC GACTGCGCGC TCAGCTACGG CCTGGTGGAG TACCTGCGCA CGCTGGAGAT GTTGAAGGAA CATGGCTGGT CGGCCAGCCG CTGCATCCCG CACGGCGGGC ACCAGATGTC GCTGAACATC GCTGCCGGCC TTGGCCTCGG GGGCAACGAG TCGTACCCCG ACCTGTTCCA GCCATTCGGC GGGTTCCCGG ACGGCGTGAA GGTCGAGAAC AGCTTCGTGA CCCTGCCCGA TCTGCCGGGG ATCGGCTTCG AGGGCAAGGC CGATCTGTAC CGCGAGATGC AGGCGCTTTC GGCCTGA
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Protein sequence | MKIVEIREKT IPISSPIRNA YIDFSKMTLS LVAVVTDVIR DGKPVVGYGF NSNGRYGQGK LMRERFIPRI MEAKPSSLVD DSGDNLDPHK IWNTMFTNEK PGGHGERSVA IGTIDMAVWD AVAKIEGKPL FQLLADRYGD GKPNRKIFVY AAGGYYYPGQ DHGKLQDEMR SYIDRGYTVV KKKIGGASLD EDLRRIDSIM EVLQDGQKLC VDANGRFDLE TAIAYAKALS QYDLFWYEEP GDPLDFELQA ALRNFYKNPM ATGEDLFSMQ DARNLIRYGG MRPDRDWLQF DCALSYGLVE YLRTLEMLKE HGWSASRCIP HGGHQMSLNI AAGLGLGGNE SYPDLFQPFG GFPDGVKVEN SFVTLPDLPG IGFEGKADLY REMQALSA
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