| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1628 |
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| Symbol | |
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| ID | 7974696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1760755 |
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| End bp | 1761567 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792228 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_002943545 |
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| Protein GI | 239814635 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0331931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGCG CATCTAGCCG CAGCAGCCGT GCCGCAGCCC TGCTGGCGAT CGCCCTGGCG
GCGGTGCCCG CTGCCTGGGC CCAGCAGGGC GCGTCCTGCG AGAAGCCGGT CTACCTGACC
CTGGACACCG GTCACATGGG CGTGGCCCCG CTGGTGGCCG ATGTGCTCAA GCGGCAGAAC
GTCCGCGTCA CCTTCTTTGC TGCCGCCGAG CCCACGCTGA CCGGCGGCGA CAGCCTCGAC
AGCCAGTGGG CGCCGTGGTG GAAGGCGAGG GCGGCCGAGG GCAACGAATT CGCCTCCCAC
ACCTACGACC ACGCGTACTG GCGCGGCGAC CTCAAGGGCG TGGCGCCGAG CTTCCGCATC
AAGCCTTCGG CGGGCGCATT GGCGGGGCGC GAGTTCACCT GGAGCGCGGC CGAATACTGC
GCCAACATCA GCAAGGCCTC CGAGCGGCTG GCCCTCATCA CCGGCAAGAA GCCGCTGCCG
CTGTTCCGCG CACCGGGCGG CAAGACCTCG CCCCGGCTGC TGGCGGCGGC CAAGGCCTGC
GGCTTCGAGC ACGTGGGCTG GTCGCCGGCC GGCTTCCTCG GGGACGAGTT GCCGAGCGAG
AAGTTCAGCA ACGAAAAGCT CCTTTCGCAG GCGCTGGAGA GCATCCGCCC CGGCGACGTC
CTGCTCGCGC ACCTGGGCAT CTGGTCGCGC AAGGATCCGT GGGCGCCGGC CAACCTCGAA
CCGCTGATCG CCGGCCTCAA GGCCAAGGGC TTCTGCTTCG AGACGCTGCG CCAGCATCCG
CAGTACCGCG CCTGGATCGC GTCCCACCCC TGA
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| Protein sequence | MASASSRSSR AAALLAIALA AVPAAWAQQG ASCEKPVYLT LDTGHMGVAP LVADVLKRQN
VRVTFFAAAE PTLTGGDSLD SQWAPWWKAR AAEGNEFASH TYDHAYWRGD LKGVAPSFRI
KPSAGALAGR EFTWSAAEYC ANISKASERL ALITGKKPLP LFRAPGGKTS PRLLAAAKAC
GFEHVGWSPA GFLGDELPSE KFSNEKLLSQ ALESIRPGDV LLAHLGIWSR KDPWAPANLE
PLIAGLKAKG FCFETLRQHP QYRAWIASHP
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