| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1627 |
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| Symbol | |
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| ID | 7974695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1759764 |
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| End bp | 1760771 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792227 |
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| Product | 40-residue YVTN family beta-propeller repeat protein |
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| Protein accession | YP_002943544 |
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| Protein GI | 239814634 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0205885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGATTTC CTGCCCGACC GAATGGCCGC TTTTCGGCCT TCCTGTTCTC ATGCCTCGCG
GTCTGGCTGG CGCAAGCCGC CGCCGCCGCA CCGCCCGAAG CCCCGCCGAT CTTCGTGCTC
AATTCGCTGG ACGCCAGCGT CAGCGTGATC AGTCCAGTCG ACTGGACTGA AAAGCAGCGC
ATCGCCACCG GCAAGGAGCC GCACCACCTC TACATGACGC CCGACGAAAA GTCGGTCATC
GTGGCCAATT CGGCGGGCGA TTCGCTCACT TTCCTGAACC CCAGGACGGC CGAAGTGCAG
CGCGTGGTCT ACGGCATCAT CGATCCCTAC CAGCTGCAGT TCTCGCGCGA CATGAAGTGG
TTCGTCACCG CGGGCAACCG CCTGAACCAC GTCGACATCT ACCGCTGGGA CGGCAAGGAC
CTGAAGCTGG CCAAGCGCAT CGCGTCGGGC AAGACGCCCA GCCACATCTG GATCGACAAC
ACCAGCACCA TCGCCTACGT GACCATGCAG GACAGCGACG AGCTGATCGC CATCGACCTG
CCCACGCAGA CCATCCGCTG GCGCGTGGCC ACCGGCGCCA TGCCGGCCGA CATCTTCGGC
GTCCACAACG ACAAGACCCT GCTCGTGGGC CTGACCGGCA GCGACGGCGT GCAGGTGTTC
GACGTGGCCG GTGCCGAGCC CAAGCTGGTC GGCAAGATCC CGACCGGCAA GGGCGCCCAT
GCCTTCCGCT CGGCTGGCGA CGGCAAGAGC GTGTTCGTGA GCAACCGGGT GGCCAACACC
ATCAGCCGGA TCGACCTTGC GACGCTGAAG GTCGGCGCCG TCTACCCGGT GCCGGGCGGG
CCCGACTGCA TGGACGTGTC AGCCGACGGC AAGACGCTGT ATGTCACCTC GCGCTGGGCC
AAGAAGCTCA GCGTGGTGGA CCTGGTGAAC AACAAGCTCG TGCGCCAGGT GAACGTCGGC
CGCTCGCCGC ACGGCGTCTG GACGCTGGAC CATGGCAAGC GCATCTAG
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| Protein sequence | MRFPARPNGR FSAFLFSCLA VWLAQAAAAA PPEAPPIFVL NSLDASVSVI SPVDWTEKQR
IATGKEPHHL YMTPDEKSVI VANSAGDSLT FLNPRTAEVQ RVVYGIIDPY QLQFSRDMKW
FVTAGNRLNH VDIYRWDGKD LKLAKRIASG KTPSHIWIDN TSTIAYVTMQ DSDELIAIDL
PTQTIRWRVA TGAMPADIFG VHNDKTLLVG LTGSDGVQVF DVAGAEPKLV GKIPTGKGAH
AFRSAGDGKS VFVSNRVANT ISRIDLATLK VGAVYPVPGG PDCMDVSADG KTLYVTSRWA
KKLSVVDLVN NKLVRQVNVG RSPHGVWTLD HGKRI
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