Gene Vapar_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1562 
Symbol 
ID7974791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1689929 
End bp1690570 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content67% 
IMG OID644792162 
Producthypothetical protein 
Protein accessionYP_002943479 
Protein GI239814569 
COG category[S] Function unknown 
COG ID[COG3495] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.410423 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCATCG CAAAGAAGAA CTCCACGATC AACGCCTTCA CGCGGCTTTC GATGCTGCTG 
GCTGGCGCCG GCCTTGCCGC CGCCACATGG GCCGCCGACC CGGCACCCAA GGACACGACC 
GCATCGAACC CGCTCGGCGG CAAGGCCGCA CCGCCTGCTG CCGCAGCCAA GGCTGCGCCG 
GGCCAGCCGC GCCAGATCAC CTGGGAAGAG CTCGTGCCCA AGGACTGGGA CCCGGCCAAG 
GAATTCAAGG GCATGGACCT GAGCGCGCTC AACGACGGCG ACCCGCGCGC CAACGAGCTG 
CTCATGAAGA TGCAGGAAGT GTCGAACAAC GCACCGACCA ACCCCTCCAT GAACGGCGCG 
GACATCAAGA TCCCGGGCTT CATCGTGCCG CTCGAGGAAG CCAAGGGCGA AGTGACCGAG 
TTCCTGCTCG TGCCCTACTT CGGCGCCTGC ATCCACACGC CGCCGCCGCC GGCCAACCAG 
ATCCTGCACG TGGTCACGCC CAAGGGCGCC AAGTTCCGCG CCATGGACAC CGTGTGGGTC 
ACCGGCAAGC TGCAGACCCT GCGCAACGAT TCGATGATGG GCGTGAGCGG CTACCACGTG 
AACGCGACGA GCGTCACCAA GTACACGGGC GGCGCCAAGT AG
 
Protein sequence
MRIAKKNSTI NAFTRLSMLL AGAGLAAATW AADPAPKDTT ASNPLGGKAA PPAAAAKAAP 
GQPRQITWEE LVPKDWDPAK EFKGMDLSAL NDGDPRANEL LMKMQEVSNN APTNPSMNGA 
DIKIPGFIVP LEEAKGEVTE FLLVPYFGAC IHTPPPPANQ ILHVVTPKGA KFRAMDTVWV 
TGKLQTLRND SMMGVSGYHV NATSVTKYTG GAK