| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1539 |
|---|
| Symbol | |
|---|
| ID | 7973139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1662597 |
|---|
| End bp | 1663421 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792139 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943456 |
|---|
| Protein GI | 239814546 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.610127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCC ACATCGTGCC GGCGCGAACC GGCGCCGAAT GGGTCCGCCT CGGGCTCAAG
ACCTTCTGGC GGCAGCCGCT CGCCTTCATC TCGCTGTTCT TCCTGCTGAT GGCGCTGATC
TCGACGGTGT CGCTGCTGCC GCTGGTGGGC AGCGTGCTGG CGCCGATCCT GCTGCCCTTC
ATGACGCTGG GCCTGATGGT GGCCACTTCA ATTGCCTACA CCGACAACGC CGAGGGTGCC
GGCACCGCCG GCCATGCGCA GCGGCCCACC GGCTCGGCCA TGTTCGTGGC GGTGGCGGCC
GCCATGCGCA CCGAGTGGCG CTCGCTGGTC AAGCTCGGCG CGATCTCGGC GGCGTATTTC
GTGGTGGCGG TGCTGCTCAC GAGCTTCATC GACGGCGGAC AGCTGGCACG CGCCTACCTG
CTCGACGACA TGCCCTCGGC CGAGACCATC GCGAGCAGCG ACTTCCAGGT CGCGCGCATG
TTCCTCATGT GCCTGAACCT GCCGCTCTCG CTGGCAATGT GGCACGCCCC GGCGCTCGTG
CACTGGCACG GCGTGGAGCC GGTCAAGAGC ATCTTCTTCA GCGTGGTGGC ACTGTTCCGC
AACTTCGGCG CCTACGCGCT CTTCGTGCTG GCGTGGTTCG GCGTGTTCCT GCTCGCGGGC
ATCGGCATGG GGCTCATCGC CACCGTGCTG ATCGGCGTGG GCGCGGCGGC CGGCGGCGCG
GCGCTCATCG GCAACGTGCT GATCGTGGGA TCGGCGCTGG TGCTCGCGGC CATGTCGCTG
AGCTCCACCT GGTTCACCTT CCGCGACAGC TTCGATCCGA GCTGA
|
|---|
| Protein sequence | MKLHIVPART GAEWVRLGLK TFWRQPLAFI SLFFLLMALI STVSLLPLVG SVLAPILLPF
MTLGLMVATS IAYTDNAEGA GTAGHAQRPT GSAMFVAVAA AMRTEWRSLV KLGAISAAYF
VVAVLLTSFI DGGQLARAYL LDDMPSAETI ASSDFQVARM FLMCLNLPLS LAMWHAPALV
HWHGVEPVKS IFFSVVALFR NFGAYALFVL AWFGVFLLAG IGMGLIATVL IGVGAAAGGA
ALIGNVLIVG SALVLAAMSL SSTWFTFRDS FDPS
|
|---|
| |