| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1497 |
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| Symbol | |
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| ID | 7973095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1619510 |
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| End bp | 1620763 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792095 |
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| Product | protein of unknown function DUF35 |
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| Protein accession | YP_002943414 |
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| Protein GI | 239814504 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATGC CCCTGATGCG CCCTCCGCGC AAGAACCCGG TGCTGCGCAC CCGGCAGATG
AACCTGCCGC CCGGCGCGCG CGGCCGCGTG GCGCTCGGCC TCACGGCGGC CGCTGCCGAA
GGCCGCTTCG AGCTGCAGAC CTGCGACCGA TGCGGCACGG TGCAGTACCC GCCGCGCGAG
GTCTGCCACA AGTGCCTCTC GTCCTCCTTG CGCTGGCGCG CACAGAGCGG CGAGGGCGAA
CTGCTCGGCA GCACGACGCT GCACCACAGC AACGACCTGT TCTTCCGCGA GCGGCTGCCC
TGGCGGCTGG GCCTGGTGCA CCTGGATGCC GGCCCGACGC TCATGGTCCA CCTGCATGGC
GAGGTCGGCG ATGCGCCGCA AAGAGTGCGC GTGGGCGCCC GTCTCGACCG CGCGGGCCAG
GCCGTTCTCA TTGGTTTTCC GTTTGAAGGG AGTCCCCACA TGGCCGACGA CAAGATGCTG
CGTGAAATGA CCAGCGACCC CAAGTTCCGC AAGGTGCTGG TGACCGACGG CAAGACAGAG
GTCGGCCAGG CCATCGTGCG CGCGCTGGTG AAGGCCGGCG CCGACATCGT CTGGGTCGGC
CATGCCGAGC CGTGGAAGAA GATGGGCGAG GGGCTGGACG ACATCTCGGC GCTGCCTCAG
GTCACGCTGG TGCCGCTGGA CCTGACCAAC GGCCGCCAGG TGACCGAGCT CGCGGGCTCC
ATCGGCGGCA AGGTCGACAT CGTGATCAAC AACGCCGAGG TGCACCGCAC CTTCGGCATC
GGCGCGCGCC GCGGCACCGA CGTGGCCAAG GCCGAGATGG ACATCAACTA CTTCGGCCTG
CTGCGCCTTG CGCAGGAGTT CGGCCCCGCG CTCAAGGGCC GCTCGGCCGA CGGCGCGACG
GGCGCCACGG CCTGGGTCAA CCTGCTGTCG ATCTACGCGC TCAGCAACTT CCCGCCGCAC
GGCACCTTCA GCGCATCGAA GGCGGCCGCG CATTCGCTTG CGCAGTGCCT GCGCGCCGAG
ATGCGGCCGG CCGGCATCCG CGTGATCAAC GTGTTTCCCG GCCCCATCGA CGACGAGTGG
AACCAGCACA CGCCGCCGCC GAAGCTCGCG CCCACCGCGC TGGCCAATGC CATCGTCAAG
GCGCTGCGCG ATGGCGTCGA GGACGTCTAT CCGGGCGACG TGGCGCAGGA GTGGCTGGAG
CGCTGGCGCG ACAACCCCAA GGTGCTCGAG CGGGAACTGG CCGCAGGCGG CTGA
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| Protein sequence | MTMPLMRPPR KNPVLRTRQM NLPPGARGRV ALGLTAAAAE GRFELQTCDR CGTVQYPPRE
VCHKCLSSSL RWRAQSGEGE LLGSTTLHHS NDLFFRERLP WRLGLVHLDA GPTLMVHLHG
EVGDAPQRVR VGARLDRAGQ AVLIGFPFEG SPHMADDKML REMTSDPKFR KVLVTDGKTE
VGQAIVRALV KAGADIVWVG HAEPWKKMGE GLDDISALPQ VTLVPLDLTN GRQVTELAGS
IGGKVDIVIN NAEVHRTFGI GARRGTDVAK AEMDINYFGL LRLAQEFGPA LKGRSADGAT
GATAWVNLLS IYALSNFPPH GTFSASKAAA HSLAQCLRAE MRPAGIRVIN VFPGPIDDEW
NQHTPPPKLA PTALANAIVK ALRDGVEDVY PGDVAQEWLE RWRDNPKVLE RELAAGG
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