| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1464 |
|---|
| Symbol | |
|---|
| ID | 7974203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1586800 |
|---|
| End bp | 1587864 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644792062 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943381 |
|---|
| Protein GI | 239814471 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.209689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CCTCCCTCGC CACTTTCGAA ACCAAGCCCC AGCCCGCCTC GCGCAACGTG
GTGCTGGCCA GCTACCTGCT GATGCCGGCC GCGCTGCTGC TGGTGATGTG GCAGCACCTG
CTGCCCGGCC TGCTGTGCGT GTGCATCGGC TTCCTGGCCA CCCGCTGGTT CACGCGGCTG
ATCGTCGGCG GCCTGGCGCG CCTGAAGCTG CCGTTCGAAC GTGCCGACGT GCCGGCCCGG
GTGCTGGCCG TCACGCTGGT GCTGCTGGCG CCCATCGCGC TGATCTCGCT GGGCCTGTCG
CAGGCGCGCG AGTACATCCT CGACGCGCCC GACCAGTACC GCGAACTGCT CGACTACACG
GCGCGCACGG TGCTCGAACT GCGGCTCAAG CTGCCACCCG AAATTGCGGT CTACCTGCCC
GAAGGCGCGG CCGAGGTGCA GCGGGTGGTG GCCAACTACC TGCGCGCCCA GGCCGGTTCG
CTGGCGCTGG CCGGACGGGC ATGGCTCGGC GGCCTGCTGT TTGCCTACGT GGGACTCATC
GTGGGCGGAT TGGCCGCCAT CGCGCCATCG CCGCTGCAGC GCCGGCCGCT CGCCGCGCAG
CTGCACCGGC GCATCGCGAT CTTCGGCGAG GCTTTCGGCC AGATCGTGGC CGCGCAGTTC
TGGATCGCGG CCTTCAACAC GCTGCTGACC GCCATCTTCC TGCTGTTCCT GATGCCGCTC
TGGGGCCCTC ACCTGCCCTA CACGCCGGCC CTGATCACGC TGACCTTCGT GGCGGGCCTG
GTGCCCATCG TCGGCAACCT GGTCTGCAAC TCGGTGATCA CGCTGGTGGC GCTGTCGGTG
TCGCCCGTGA CGGCGCTGGC CTGCCTGGCG TTCCTGATCA TCATCCACAA GGCCGAATAC
GTGATCAACG CCAAGGTGGT CGGCAGCCGC ACGCAGATGC GGGTGTGGGA GCTGCTGGCG
GTGATGTTCG TGGCCGAGGC GGTGTTCGGC CCGGCGGGGC TGGTGGCGGC ACCGCTTTTC
TATGCCTACC TCAAGAAAGA GCTGCAGGCG GCCGGCCTTG TTTAG
|
|---|
| Protein sequence | MAKPSLATFE TKPQPASRNV VLASYLLMPA ALLLVMWQHL LPGLLCVCIG FLATRWFTRL
IVGGLARLKL PFERADVPAR VLAVTLVLLA PIALISLGLS QAREYILDAP DQYRELLDYT
ARTVLELRLK LPPEIAVYLP EGAAEVQRVV ANYLRAQAGS LALAGRAWLG GLLFAYVGLI
VGGLAAIAPS PLQRRPLAAQ LHRRIAIFGE AFGQIVAAQF WIAAFNTLLT AIFLLFLMPL
WGPHLPYTPA LITLTFVAGL VPIVGNLVCN SVITLVALSV SPVTALACLA FLIIIHKAEY
VINAKVVGSR TQMRVWELLA VMFVAEAVFG PAGLVAAPLF YAYLKKELQA AGLV
|
|---|
| |