| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1395 |
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| Symbol | |
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| ID | 7971223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1517314 |
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| End bp | 1517988 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791993 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_002943312 |
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| Protein GI | 239814402 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAACTT CTCCCCCGCC AGTGCCACCG GACTCCGGCT TGCCCGATGG GTCCGCCGAG
GCGCCGCGCC CGGGCGAGGT CGACCTTCAG CTGGTCCAGC GCACGGTCGC GGGCGACCAG
AAGGCCTTCG AACTGCTGGT CATCAAGTAC CAGCGCCGGA TCGAGCGCCT GATCGGGCGC
ATGGTGCGCG ACGTCGACCT GGTCGAGGAC ATCGCCCAGG AAACCTTCAT CCGGGCCTAC
CGCGCGCTGC ACCAGTTCCG CGGCGACGCC CAGTTCTACA CCTGGCTCTA CCGGATTGCG
GTCAACACCG CCAAGAAGGC GCTGGTCGAC ATGAAGCGCG ACCCGACCAT CTCCGAAAGC
GCCCTGCGGC CGTCTTCTGA CGAGGACGAT GAAACTTACC GCCCCGGAAA CGAACCAATC
AGCGACGAAA CCCCCGAATC AGTCTTGGCA GCAAACGAGA TCGCCCAGGT CGTCGAGGCG
GCCATGGAAG CATTGCCGCC CGAATTGCGC CAGGCGGTCA CCCTGCGGGA GATCGAGGGC
ATGAGTTACG AAGAGATCGC CGAGGTCATG GATTGCCCTA TCGGCACGGT GCGCTCGCGT
ATTTTCCGGG CGCGTGAGGC CATTTCGGCC AGGGTCAAAC CGCTGCTGGA CAACCAGTCC
GGCAAGCGTT GGTAG
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| Protein sequence | MTTSPPPVPP DSGLPDGSAE APRPGEVDLQ LVQRTVAGDQ KAFELLVIKY QRRIERLIGR
MVRDVDLVED IAQETFIRAY RALHQFRGDA QFYTWLYRIA VNTAKKALVD MKRDPTISES
ALRPSSDEDD ETYRPGNEPI SDETPESVLA ANEIAQVVEA AMEALPPELR QAVTLREIEG
MSYEEIAEVM DCPIGTVRSR IFRAREAISA RVKPLLDNQS GKRW
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