| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1380 |
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| Symbol | |
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| ID | 7973061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1505627 |
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| End bp | 1506298 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791978 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
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| Protein accession | YP_002943297 |
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| Protein GI | 239814387 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATT CCTCCAGACC CCTGCGCTTC GACCTGATCG CCTTCGATTG GGACGGCACG
CTCTACGACT CCACGCGGCT CATCGTGCGC TGCATCCAGG CGGCGGTGAT CGACGTCGGC
GGCGCCAAGC CGAGCGAGAA CGATGCCGCA TGGGTGATCG GCCTGGGCCT GGCCGAGGCC
CTTGCGCGCG CCGCGCCCGA CGTGCCGAAG GAAAAATACG CCGAGCTCGG CGCCCGTTAC
CGCTACCACT ATCTGCAGCA CCAGGACGAC CTCGTGCTGT TCGACGGCGT GCTGCAGATG
ATCGATGCGC TGCGCGCGCG CGGCCACAAG CTTGCGGTGG CCACGGGCAA GTCGCGCCGC
GGCCTGAACG AGGCGCTGAA GTCGGTCGCG CTGCGCGACC GCTTCGACGC CTCGCGCACC
GCCGACGAGA CCTTCGGCAA GCCGCATCCG CGCATGCTGC TGGAACTCAT GGAAGAACTC
GAGGTGCCGC CCGAACGCAC CCTGATGATC GGCGACACCA CGCACGACCT GCAGCTGGCG
CTCAATGCCG GCTGCGCGAG CGTGGGCGTG AGCTACGGCG CGCACGAGCC CGAGAGCTTC
GACGAGCTGA AGCCGCTGTT TGTCGCCCAC TCGGTGGCCA GCCTGGAGGC ATGGCTTCTG
GAGCACGCCT GA
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| Protein sequence | MTDSSRPLRF DLIAFDWDGT LYDSTRLIVR CIQAAVIDVG GAKPSENDAA WVIGLGLAEA
LARAAPDVPK EKYAELGARY RYHYLQHQDD LVLFDGVLQM IDALRARGHK LAVATGKSRR
GLNEALKSVA LRDRFDASRT ADETFGKPHP RMLLELMEEL EVPPERTLMI GDTTHDLQLA
LNAGCASVGV SYGAHEPESF DELKPLFVAH SVASLEAWLL EHA
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